Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HXS77_RS08340 Genome accession   NZ_CP058355
Coordinates   1767872..1769299 (-) Length   475 a.a.
NCBI ID   WP_178887396.1    Uniprot ID   -
Organism   Escherichia coli strain AMSCJX03     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1762872..1774299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS77_RS08310 (HXS77_08310) yeeZ 1762927..1763751 (+) 825 WP_029399144.1 SDR family oxidoreductase -
  HXS77_RS08315 (HXS77_08315) yeeY 1763797..1764726 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HXS77_RS08320 (HXS77_08320) yoeI 1764941..1765003 (+) 63 WP_010723108.1 membrane protein YoeI -
  HXS77_RS08325 (HXS77_08325) plaP 1764993..1766351 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HXS77_RS08330 (HXS77_08330) tsuA 1766530..1767588 (+) 1059 WP_032352489.1 thiosulfate utilization transporter TsuA/YeeE -
  HXS77_RS08335 (HXS77_08335) tsuB 1767602..1767829 (+) 228 WP_097430815.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HXS77_RS08340 (HXS77_08340) sbcB 1767872..1769299 (-) 1428 WP_178887396.1 exodeoxyribonuclease I Machinery gene
  HXS77_RS08345 (HXS77_08345) dacD 1769508..1770674 (+) 1167 WP_001514310.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HXS77_RS08350 (HXS77_08350) sbmC 1770793..1771266 (+) 474 WP_001105398.1 DNA gyrase inhibitor SbmC -
  HXS77_RS08355 (HXS77_08355) yeeA 1771465..1772523 (+) 1059 WP_001564775.1 FUSC family protein -
  HXS77_RS08360 (HXS77_08360) tmaR 1772695..1773024 (+) 330 WP_000450409.1 DUF496 family protein -
  HXS77_RS08365 (HXS77_08365) - 1773125..1773568 (-) 444 WP_001564774.1 EutP/PduV family microcompartment system protein -
  HXS77_RS08370 (HXS77_08370) pduU 1773573..1773923 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.78 Da        Isoelectric Point: 5.4720

>NTDB_id=405403 HXS77_RS08340 WP_178887396.1 1767872..1769299(-) (sbcB) [Escherichia coli strain AMSCJX03]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVVYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVMAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=405403 HXS77_RS08340 WP_178887396.1 1767872..1769299(-) (sbcB) [Escherichia coli strain AMSCJX03]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCGTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCACTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GATGGCGATATTCGCTGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579