Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HXT67_RS42410 Genome accession   NZ_CP058354
Coordinates   9030361..9031347 (+) Length   328 a.a.
NCBI ID   WP_014491187.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain 5038     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 9025361..9036347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXT67_RS42390 - 9025693..9027291 (+) 1599 WP_014491191.1 ABC transporter substrate-binding protein -
  HXT67_RS42395 - 9027327..9028274 (+) 948 WP_014491190.1 ABC transporter permease -
  HXT67_RS42400 - 9028464..9029357 (+) 894 WP_014491189.1 ABC transporter permease -
  HXT67_RS42405 - 9029357..9030364 (+) 1008 WP_014491188.1 ABC transporter ATP-binding protein -
  HXT67_RS42410 amiE 9030361..9031347 (+) 987 WP_014491187.1 dipeptide ABC transporter ATP-binding protein Regulator
  HXT67_RS42415 - 9031319..9032131 (-) 813 WP_014491186.1 hypothetical protein -
  HXT67_RS42420 - 9032381..9034354 (-) 1974 WP_028169957.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HXT67_RS42425 - 9034351..9035967 (-) 1617 WP_014491184.1 acyl-CoA carboxylase subunit beta -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35759.21 Da        Isoelectric Point: 8.6168

>NTDB_id=405370 HXT67_RS42410 WP_014491187.1 9030361..9031347(+) (amiE) [Bradyrhizobium japonicum strain 5038]
MTEALLEVTDLKKHYAVRAGVLRRQVGTVHAVDGVSFSVHTGETLGLVGESGCGKSTVARSVLRLVEPTSGQIRLDGEDI
TRLSKTALRPHRRSMQIVFQDPFASLNPRMTAGDIVGEPLAVHGLASGKELEARTAKLFEQVGLRPDQMRNFPHQFSGGQ
RQRICIARALALGPRLIVCDEPVSALDVSIQAQVINLLIDLQKQHGFSYLFIAHDLAVVAHISHRVAVMYLGRIVEIADK
DELFRNPRHPYTQALLASVPVANPFAKKLAPLVDGDVPSPVNPPSGCAFHTRCRFAMERCKTERPALVDAGDRHQVACLL
NEGTGQGQ

Nucleotide


Download         Length: 987 bp        

>NTDB_id=405370 HXT67_RS42410 WP_014491187.1 9030361..9031347(+) (amiE) [Bradyrhizobium japonicum strain 5038]
ATGACCGAGGCGCTGCTCGAAGTCACCGATCTCAAGAAGCACTATGCGGTGCGCGCCGGCGTGTTGCGGCGGCAGGTCGG
CACCGTGCATGCGGTCGACGGCGTCTCGTTCTCGGTTCATACCGGCGAAACGCTCGGCCTTGTCGGCGAATCCGGCTGCG
GCAAGTCGACGGTGGCGCGCAGCGTGCTGCGGCTGGTCGAGCCGACTTCAGGCCAGATCCGCCTTGATGGAGAGGACATC
ACCCGTCTCTCCAAGACCGCGCTGCGGCCGCATCGCCGCTCAATGCAGATCGTGTTCCAGGACCCGTTCGCTTCGCTCAA
TCCGCGCATGACCGCCGGCGACATCGTCGGTGAACCGCTCGCCGTGCATGGGCTCGCAAGCGGCAAGGAGCTGGAAGCGC
GTACCGCAAAACTGTTCGAGCAGGTCGGCCTGCGGCCCGATCAGATGCGCAACTTCCCGCACCAATTTTCCGGCGGCCAG
CGCCAGCGCATCTGCATCGCGCGGGCGCTTGCGCTGGGGCCGCGCCTGATCGTCTGCGACGAGCCGGTCTCCGCGCTCGA
CGTCTCGATCCAGGCGCAGGTGATCAATCTCCTGATCGACCTGCAAAAGCAGCACGGCTTCTCCTATCTCTTCATCGCCC
ACGACCTCGCCGTGGTCGCCCATATCAGCCACCGCGTCGCCGTGATGTATCTCGGCCGCATCGTCGAGATCGCCGACAAG
GACGAGCTGTTCCGCAATCCGCGCCATCCCTACACGCAGGCCCTGCTTGCGTCAGTGCCGGTTGCAAACCCGTTTGCCAA
GAAGCTCGCGCCGCTGGTCGACGGCGACGTGCCGAGCCCGGTCAATCCGCCATCTGGCTGCGCGTTTCACACCCGCTGCC
GGTTTGCGATGGAGCGGTGCAAGACGGAGCGGCCGGCGCTGGTGGACGCTGGTGATAGGCATCAGGTGGCGTGTCTGCTC
AACGAGGGGACGGGGCAGGGTCAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(33-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

39.94

100

0.405
  amiE Streptococcus thermophilus LMD-9

39.339

100

0.399
  amiE Streptococcus thermophilus LMG 18311

39.339

100

0.399
  oppD Streptococcus mutans UA159

39.815

98.78

0.393
  amiF Streptococcus salivarius strain HSISS4

45.588

82.927

0.378
  amiF Streptococcus thermophilus LMG 18311

45.185

82.317

0.372
  amiF Streptococcus thermophilus LMD-9

45.185

82.317

0.372

Multiple sequence alignment