Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HXT67_RS21980 Genome accession   NZ_CP058354
Coordinates   4838485..4839471 (-) Length   328 a.a.
NCBI ID   WP_014495222.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain 5038     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4833485..4844471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXT67_RS21960 - 4834226..4835602 (+) 1377 WP_039228112.1 SagB family peptide dehydrogenase -
  HXT67_RS21965 - 4835650..4836570 (-) 921 WP_014495225.1 ABC transporter permease -
  HXT67_RS21970 - 4836567..4837496 (-) 930 WP_014495224.1 ABC transporter permease -
  HXT67_RS21975 - 4837496..4838488 (-) 993 WP_014495223.1 ABC transporter ATP-binding protein -
  HXT67_RS21980 amiE 4838485..4839471 (-) 987 WP_014495222.1 ABC transporter ATP-binding protein Regulator
  HXT67_RS21985 - 4839472..4841109 (-) 1638 WP_014495221.1 ABC transporter substrate-binding protein -
  HXT67_RS21990 - 4841140..4841955 (-) 816 WP_014495220.1 sugar phosphate isomerase/epimerase family protein -
  HXT67_RS21995 - 4842431..4844464 (-) 2034 WP_014495219.1 NAD(+) synthase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 34346.95 Da        Isoelectric Point: 6.7405

>NTDB_id=405341 HXT67_RS21980 WP_014495222.1 4838485..4839471(-) (amiE) [Bradyrhizobium japonicum strain 5038]
MATPLVSIQGLNVAFTGVSVLRGVDLALQKGEAVGLVGESGSGKSVTWLAALGLLPRHAKVSGSVRLDGREILGAAASEL
DRVRGGRVAMIFQDPASALNPVLTIRKQLCEALALHRDLSGEAVKAEARRLLDLVGIPDAARRLEAYPHEFSGGQVQRIM
IAMALAGNPDLLVADEPTTALDATIQAQILELLATIRREMSMAMVLISHDLGVVAENCDRVAVMYAGRIVEQAPANQLFA
DPVHPYAQGLIGALPPLDGPRRRFTAIPGTVPDPAHMPSGCAFAPRCALAAEPCGLAVPSLAPIANDRVVACIRAEASRR
ALLGIAAE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=405341 HXT67_RS21980 WP_014495222.1 4838485..4839471(-) (amiE) [Bradyrhizobium japonicum strain 5038]
GTGGCGACGCCGCTGGTCAGCATCCAGGGCCTCAACGTCGCCTTCACCGGCGTATCGGTCTTGCGCGGCGTCGATCTCGC
TTTGCAGAAGGGCGAGGCCGTCGGCCTCGTCGGCGAGTCCGGCTCCGGCAAGTCAGTGACGTGGCTTGCTGCGCTCGGCC
TCTTGCCGCGGCATGCAAAAGTCTCGGGCTCCGTGCGGCTCGACGGACGCGAAATCCTCGGCGCAGCCGCGAGTGAGCTT
GACCGGGTGCGGGGCGGGCGGGTCGCCATGATTTTTCAGGACCCCGCAAGCGCGCTCAATCCGGTGCTCACCATTCGCAA
GCAGCTGTGCGAGGCTTTGGCGCTGCATCGCGATCTCTCGGGCGAGGCGGTGAAGGCCGAAGCGCGGCGGCTGCTCGATC
TCGTTGGCATTCCCGATGCGGCGCGGCGGCTCGAAGCCTATCCGCACGAATTCTCCGGCGGCCAGGTCCAGCGCATCATG
ATCGCGATGGCGCTGGCCGGAAATCCCGATCTCCTCGTCGCGGACGAGCCGACCACGGCGCTTGACGCCACCATCCAGGC
GCAGATCCTGGAGCTGCTCGCGACCATCCGCCGCGAGATGAGCATGGCGATGGTGCTGATCAGCCATGATCTCGGCGTCG
TCGCGGAGAACTGCGACCGCGTCGCCGTGATGTATGCCGGCCGCATCGTCGAGCAGGCGCCCGCCAACCAGCTCTTTGCC
GATCCGGTGCATCCCTACGCGCAGGGCCTGATCGGCGCACTGCCGCCGCTCGACGGGCCGCGTCGGCGTTTCACGGCCAT
TCCGGGGACCGTTCCCGATCCCGCGCACATGCCAAGCGGCTGTGCCTTCGCGCCGCGCTGCGCGCTGGCGGCCGAGCCGT
GCGGACTTGCCGTGCCGAGCCTGGCGCCGATCGCGAACGATCGCGTGGTTGCCTGTATCCGTGCTGAGGCCTCGCGCCGT
GCGCTGCTCGGGATCGCCGCCGAATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-294)

ABC transporter (ABC_tran)

(21-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

45.652

84.146

0.384
  amiE Streptococcus thermophilus LMD-9

45.652

84.146

0.384
  oppD Streptococcus mutans UA159

42.414

88.415

0.375
  amiE Streptococcus salivarius strain HSISS4

44.404

84.451

0.375

Multiple sequence alignment