Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | GOE21_RS08195 | Genome accession | NZ_CP046539 |
| Coordinates | 1583629..1584258 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain FHI_NMBU_10 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1553555..1596949 | 1583629..1584258 | within | 0 |
Gene organization within MGE regions
Location: 1553555..1596949
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOE21_RS07995 (GOE21_08005) | - | 1556004..1557052 (-) | 1049 | Protein_1588 | site-specific DNA-methyltransferase | - |
| GOE21_RS08000 (GOE21_08010) | - | 1557203..1557400 (-) | 198 | WP_000917768.1 | hypothetical protein | - |
| GOE21_RS08005 (GOE21_08015) | - | 1557617..1558177 (-) | 561 | WP_000640044.1 | DUF1133 family protein | - |
| GOE21_RS08010 (GOE21_08020) | - | 1558186..1558545 (-) | 360 | WP_000904153.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GOE21_RS08015 (GOE21_08025) | - | 1558558..1559607 (-) | 1050 | WP_086257807.1 | DUF968 domain-containing protein | - |
| GOE21_RS08020 (GOE21_08030) | - | 1559609..1559887 (-) | 279 | WP_062872446.1 | hypothetical protein | - |
| GOE21_RS08025 (GOE21_08035) | - | 1560069..1560350 (+) | 282 | WP_062872444.1 | hypothetical protein | - |
| GOE21_RS08030 (GOE21_08040) | - | 1560652..1561005 (-) | 354 | WP_086218523.1 | DUF551 domain-containing protein | - |
| GOE21_RS08035 (GOE21_08045) | - | 1561020..1561370 (-) | 351 | Protein_1596 | hypothetical protein | - |
| GOE21_RS08040 (GOE21_08050) | - | 1561372..1561716 (-) | 345 | WP_086218524.1 | ead/Ea22-like family protein | - |
| GOE21_RS08045 (GOE21_08055) | - | 1561703..1562032 (-) | 330 | WP_033815700.1 | hypothetical protein | - |
| GOE21_RS08050 (GOE21_08060) | - | 1562029..1562679 (-) | 651 | WP_033815699.1 | ead/Ea22-like family protein | - |
| GOE21_RS08055 (GOE21_08065) | - | 1562666..1562971 (-) | 306 | WP_001563022.1 | DUF4406 domain-containing protein | - |
| GOE21_RS08060 (GOE21_08070) | - | 1562968..1563249 (-) | 282 | WP_172398167.1 | DNA-binding protein | - |
| GOE21_RS08065 (GOE21_08075) | - | 1563282..1564043 (-) | 762 | WP_086257809.1 | DUF1627 domain-containing protein | - |
| GOE21_RS08070 (GOE21_08080) | - | 1564077..1564538 (-) | 462 | WP_251302046.1 | replication protein P | - |
| GOE21_RS08075 (GOE21_08085) | - | 1564531..1565541 (-) | 1011 | WP_062871754.1 | DUF1376 domain-containing protein | - |
| GOE21_RS08080 (GOE21_08090) | - | 1565628..1566065 (-) | 438 | WP_000693932.1 | toxin YdaT family protein | - |
| GOE21_RS08085 (GOE21_08095) | - | 1566062..1566322 (-) | 261 | WP_001172789.1 | YdaS family helix-turn-helix protein | - |
| GOE21_RS08090 (GOE21_08100) | - | 1566449..1566841 (+) | 393 | WP_000578360.1 | helix-turn-helix domain-containing protein | - |
| GOE21_RS08095 (GOE21_08105) | - | 1566888..1567247 (-) | 360 | WP_001022415.1 | helix-turn-helix domain-containing protein | - |
| GOE21_RS08100 (GOE21_08110) | - | 1567250..1567552 (-) | 303 | WP_000692026.1 | type II toxin-antitoxin system HigB family toxin | - |
| GOE21_RS08105 (GOE21_08115) | - | 1567827..1567979 (+) | 153 | WP_000380312.1 | DUF1391 family protein | - |
| GOE21_RS08110 (GOE21_08120) | - | 1568498..1569349 (+) | 852 | WP_086218526.1 | Rha family phage regulatory protein | - |
| GOE21_RS08115 (GOE21_08125) | dicB | 1569360..1569548 (+) | 189 | WP_062874719.1 | cell division inhibition protein DicB | - |
| GOE21_RS08120 (GOE21_08130) | - | 1569545..1569733 (+) | 189 | WP_086257867.1 | DUF1482 family protein | - |
| GOE21_RS08125 (GOE21_08135) | - | 1569826..1572264 (+) | 2439 | WP_203062548.1 | exonuclease | - |
| GOE21_RS08130 (GOE21_08140) | - | 1572331..1572582 (+) | 252 | WP_000273163.1 | DUF4224 domain-containing protein | - |
| GOE21_RS08135 (GOE21_08145) | - | 1572551..1573570 (+) | 1020 | WP_001367167.1 | tyrosine-type recombinase/integrase | - |
| GOE21_RS08140 (GOE21_08150) | yccA | 1573978..1574637 (+) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| GOE21_RS08145 (GOE21_08155) | tusE | 1574728..1575057 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| GOE21_RS08150 (GOE21_08160) | yccX | 1575054..1575332 (-) | 279 | WP_000048250.1 | acylphosphatase | - |
| GOE21_RS08155 (GOE21_08165) | rlmI | 1575427..1576617 (+) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| GOE21_RS08160 (GOE21_08170) | hspQ | 1576675..1576992 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| GOE21_RS08165 (GOE21_08175) | yccU | 1577037..1577450 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| GOE21_RS08170 (GOE21_08180) | yccT | 1577623..1578285 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| GOE21_RS08175 (GOE21_08185) | mgsA | 1578381..1578839 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| GOE21_RS08180 (GOE21_08190) | helD | 1578871..1580925 (-) | 2055 | WP_000420533.1 | DNA helicase IV | - |
| GOE21_RS08185 (GOE21_08195) | yccF | 1581048..1581494 (+) | 447 | WP_001261231.1 | YccF domain-containing protein | - |
| GOE21_RS08190 (GOE21_08200) | yccS | 1581504..1583666 (+) | 2163 | WP_000875044.1 | YccS family putative transporter | - |
| GOE21_RS08195 (GOE21_08205) | sxy/tfoX | 1583629..1584258 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| GOE21_RS08200 (GOE21_08210) | sulA | 1584477..1584986 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| GOE21_RS08205 (GOE21_08215) | ompA | 1585343..1586383 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| GOE21_RS08210 (GOE21_08220) | matP | 1586459..1586911 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| GOE21_RS08215 (GOE21_08225) | ycbZ | 1587097..1588857 (+) | 1761 | WP_000156526.1 | Lon protease family protein | - |
| GOE21_RS08220 (GOE21_08230) | fabA | 1588926..1589444 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| GOE21_RS08225 (GOE21_08235) | rmf | 1589514..1589681 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| GOE21_RS08230 (GOE21_08240) | pqiC | 1589937..1590500 (-) | 564 | WP_000759129.1 | membrane integrity-associated transporter subunit PqiC | - |
| GOE21_RS08235 (GOE21_08245) | pqiB | 1590497..1592137 (-) | 1641 | WP_000445534.1 | intermembrane transport protein PqiB | - |
| GOE21_RS08240 (GOE21_08250) | pqiA | 1592142..1593395 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| GOE21_RS08245 (GOE21_08255) | uup | 1593525..1595432 (-) | 1908 | WP_000053089.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=405266 GOE21_RS08195 WP_000839153.1 1583629..1584258(-) (sxy/tfoX) [Escherichia coli strain FHI_NMBU_10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=405266 GOE21_RS08195 WP_000839153.1 1583629..1584258(-) (sxy/tfoX) [Escherichia coli strain FHI_NMBU_10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |