Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HXP32_RS07890 Genome accession   NZ_CP058340
Coordinates   1554115..1555620 (-) Length   501 a.a.
NCBI ID   WP_002778536.1    Uniprot ID   A0ABP2NPV3
Organism   Campylobacter coli strain 20A420     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549115..1560620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS07860 (HXP32_07870) - 1549358..1550098 (-) 741 WP_002778542.1 TerC family protein -
  HXP32_RS07865 (HXP32_07875) - 1550239..1550955 (+) 717 WP_002778541.1 ankyrin repeat domain-containing protein -
  HXP32_RS07870 (HXP32_07880) - 1551121..1551357 (+) 237 WP_002778540.1 hypothetical protein -
  HXP32_RS07875 (HXP32_07885) purN 1551495..1552070 (-) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  HXP32_RS07880 (HXP32_07890) - 1552061..1553431 (-) 1371 WP_002801372.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HXP32_RS07885 (HXP32_07895) - 1553415..1554113 (-) 699 WP_002778537.1 NYN domain-containing protein -
  HXP32_RS07890 (HXP32_07900) comM 1554115..1555620 (-) 1506 WP_002778536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HXP32_RS07895 (HXP32_07905) def 1555617..1556144 (-) 528 WP_002778535.1 peptide deformylase -
  HXP32_RS07900 (HXP32_07910) clpP 1556172..1556756 (-) 585 WP_002831473.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HXP32_RS07905 (HXP32_07915) tig 1556756..1558081 (-) 1326 WP_002831475.1 trigger factor -
  HXP32_RS07910 (HXP32_07920) folE 1558225..1558797 (+) 573 WP_002831477.1 GTP cyclohydrolase I FolE -
  HXP32_RS07915 (HXP32_07925) fliI 1558797..1560182 (+) 1386 WP_002831479.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56608.64 Da        Isoelectric Point: 8.7459

>NTDB_id=405222 HXP32_RS07890 WP_002778536.1 1554115..1555620(-) (comM) [Campylobacter coli strain 20A420]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=405222 HXP32_RS07890 WP_002778536.1 1554115..1555620(-) (comM) [Campylobacter coli strain 20A420]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGCATGCATAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGCAGTGAAAATGAGA
TTAAAAGATATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.293

99.601

0.461