Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HXP32_RS05805 Genome accession   NZ_CP058340
Coordinates   1154541..1155116 (+) Length   191 a.a.
NCBI ID   WP_002776257.1    Uniprot ID   A0ABN0EQ59
Organism   Campylobacter coli strain 20A420     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1149541..1160116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS05785 (HXP32_05795) porA 1149935..1151215 (+) 1281 WP_057993282.1 group 3 major outer membrane porin protein PorA -
  HXP32_RS05790 (HXP32_05800) dnaJ 1151355..1152486 (-) 1132 Protein_1135 molecular chaperone DnaJ -
  HXP32_RS05795 (HXP32_05805) - 1152633..1153304 (+) 672 WP_002776259.1 response regulator transcription factor -
  HXP32_RS05800 (HXP32_05810) - 1153301..1154551 (+) 1251 WP_002776258.1 ArsS family sensor histidine kinase -
  HXP32_RS05805 (HXP32_05815) recR 1154541..1155116 (+) 576 WP_002776257.1 recombination mediator RecR Machinery gene
  HXP32_RS05810 (HXP32_05820) - 1155118..1155651 (-) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  HXP32_RS05815 (HXP32_05825) cybH 1155648..1156340 (-) 693 WP_065980039.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  HXP32_RS05820 (HXP32_05830) - 1156351..1158066 (-) 1716 WP_065980040.1 nickel-dependent hydrogenase large subunit -
  HXP32_RS05825 (HXP32_05835) - 1158072..1159211 (-) 1140 WP_002776249.1 hydrogenase small subunit -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21732.15 Da        Isoelectric Point: 6.1072

>NTDB_id=405217 HXP32_RS05805 WP_002776257.1 1154541..1155116(+) (recR) [Campylobacter coli strain 20A420]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNCLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=405217 HXP32_RS05805 WP_002776257.1 1154541..1155116(+) (recR) [Campylobacter coli strain 20A420]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GCTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTGCTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366

Multiple sequence alignment