Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HXP32_RS05625 Genome accession   NZ_CP058340
Coordinates   1114110..1114490 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain 20A420     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1109110..1119490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS05600 (HXP32_05610) aspS 1109623..1111374 (+) 1752 WP_002822668.1 aspartate--tRNA ligase -
  HXP32_RS05605 (HXP32_05615) - 1111371..1111946 (+) 576 WP_002781658.1 adenylate kinase -
  HXP32_RS05610 (HXP32_05620) ppa 1111956..1112474 (+) 519 WP_002776378.1 inorganic diphosphatase -
  HXP32_RS05615 (HXP32_05625) msrA 1112522..1113022 (+) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  HXP32_RS05620 (HXP32_05630) - 1113245..1114099 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HXP32_RS05625 (HXP32_05635) dprB 1114110..1114490 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  HXP32_RS05630 (HXP32_05640) dprA 1114487..1115257 (-) 771 WP_002818781.1 DNA-processing protein DprA Machinery gene
  HXP32_RS05635 (HXP32_05645) - 1115247..1116278 (-) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  HXP32_RS05640 (HXP32_05650) ilvC 1116281..1117303 (-) 1023 WP_002806714.1 ketol-acid reductoisomerase -
  HXP32_RS05645 (HXP32_05655) - 1117426..1119360 (+) 1935 WP_002822670.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=405214 HXP32_RS05625 WP_002776373.1 1114110..1114490(-) (dprB) [Campylobacter coli strain 20A420]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=405214 HXP32_RS05625 WP_002776373.1 1114110..1114490(-) (dprB) [Campylobacter coli strain 20A420]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421