Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HXP32_RS03160 Genome accession   NZ_CP058340
Coordinates   635011..635955 (-) Length   314 a.a.
NCBI ID   WP_002777230.1    Uniprot ID   -
Organism   Campylobacter coli strain 20A420     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 630011..640955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS03125 (HXP32_03135) - 630203..630403 (+) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  HXP32_RS03130 (HXP32_03140) - 630433..630732 (-) 300 WP_002777238.1 cytochrome c -
  HXP32_RS03135 (HXP32_03145) - 630809..631372 (+) 564 WP_002820231.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  HXP32_RS03140 (HXP32_03150) rfaD 631369..632322 (+) 954 WP_002831601.1 ADP-glyceromanno-heptose 6-epimerase -
  HXP32_RS03145 (HXP32_03155) rfaE1 632315..633700 (+) 1386 WP_002831599.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  HXP32_RS03150 (HXP32_03160) gmhA 633697..634257 (+) 561 WP_002831598.1 D-sedoheptulose 7-phosphate isomerase -
  HXP32_RS03155 (HXP32_03165) - 634257..635018 (+) 762 WP_065980056.1 glycosyltransferase family 25 protein -
  HXP32_RS03160 (HXP32_03170) waaF 635011..635955 (-) 945 WP_002777230.1 lipopolysaccharide heptosyltransferase II Regulator
  HXP32_RS03165 (HXP32_03175) - 636014..636835 (+) 822 WP_032685539.1 glycosyltransferase family 2 protein -
  HXP32_RS09010 (HXP32_03180) - 637176..637322 (-) 147 WP_168848228.1 hypothetical protein -
  HXP32_RS08925 (HXP32_03185) - 637319..637555 (-) 237 WP_255296982.1 alpha-2,3-sialyltransferase -
  HXP32_RS09015 (HXP32_03190) - 637563..637876 (-) 314 Protein_628 alpha-2,3-sialyltransferase -
  HXP32_RS03190 (HXP32_03200) - 638004..638804 (+) 801 WP_002777224.1 class I SAM-dependent methyltransferase -
  HXP32_RS03195 (HXP32_03205) - 638885..639820 (+) 936 WP_002777223.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36065.60 Da        Isoelectric Point: 10.2686

>NTDB_id=405202 HXP32_RS03160 WP_002777230.1 635011..635955(-) (waaF) [Campylobacter coli strain 20A420]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=405202 HXP32_RS03160 WP_002777230.1 635011..635955(-) (waaF) [Campylobacter coli strain 20A420]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCCAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(106-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

83.067

99.682

0.828