Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   HXP32_RS01520 Genome accession   NZ_CP058340
Coordinates   306186..306782 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain 20A420     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301186..311782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS01505 (HXP32_01510) ctsR 303893..304204 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  HXP32_RS01510 (HXP32_01515) mshL 304182..305600 (+) 1419 Protein_298 pilus (MSHA type) biogenesis protein MshL -
  HXP32_RS01515 (HXP32_01520) ctsP 305593..306189 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  HXP32_RS01520 (HXP32_01525) ctsX 306186..306782 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  HXP32_RS01525 (HXP32_01530) ctsE 306775..308337 (+) 1563 WP_065980050.1 GspE/PulE family protein Machinery gene
  HXP32_RS01530 (HXP32_01535) - 308324..309498 (+) 1175 Protein_302 type II secretion system F family protein -
  HXP32_RS01535 (HXP32_01540) - 309495..310259 (-) 765 WP_002781157.1 TSUP family transporter -
  HXP32_RS01540 (HXP32_01545) - 310262..311026 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=405186 HXP32_RS01520 WP_002779313.1 306186..306782(+) (ctsX) [Campylobacter coli strain 20A420]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=405186 HXP32_RS01520 WP_002779313.1 306186..306782(+) (ctsX) [Campylobacter coli strain 20A420]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434