Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HWQ57_RS24290 Genome accession   NZ_CP058333
Coordinates   5199962..5200327 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain ACR20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5194962..5205327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ57_RS24275 (HWQ57_24075) pilK 5196306..5197181 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  HWQ57_RS24280 (HWQ57_24080) pilJ 5197242..5199290 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  HWQ57_RS24285 (HWQ57_24085) - 5199375..5199911 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  HWQ57_RS24290 (HWQ57_24090) pilH 5199962..5200327 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  HWQ57_RS24295 (HWQ57_24095) pilG 5200374..5200781 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  HWQ57_RS24300 (HWQ57_24100) gshB 5201036..5201989 (+) 954 WP_003100943.1 glutathione synthase -
  HWQ57_RS24305 (HWQ57_24105) - 5202136..5203029 (+) 894 WP_003162015.1 energy transducer TonB -
  HWQ57_RS24310 (HWQ57_24110) - 5203078..5203647 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  HWQ57_RS24315 (HWQ57_24115) ruvX 5203647..5204081 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  HWQ57_RS24320 (HWQ57_24120) pyrR 5204193..5204705 (+) 513 WP_023097137.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=405151 HWQ57_RS24290 WP_003084587.1 5199962..5200327(-) (pilH) [Pseudomonas aeruginosa strain ACR20]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=405151 HWQ57_RS24290 WP_003084587.1 5199962..5200327(-) (pilH) [Pseudomonas aeruginosa strain ACR20]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364