Detailed information NTG0405120

Bioinformatically predicted

Overview

• Name: pepF
• Type: Regulator
• Locus tag: GJR85_RS00880
• Genome accession: NZ_CP046528
• Coordinates: 184346..186142 (-)
• Length: 598 a.a.
• NCBI ID: WP_156661151.1
• Uniprot ID: -
• Organism: Lactobacillus acetotolerans strain CN247
• Function: degradation of XIP; competence shut-off (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	182752..184029	184346..186142	flank	317

Gene organization within MGE regions

Location: 182752..186142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJR85_RS00875 (GJR85_00875)	-	182752..184029 (-)	1278	WP_063507254.1	ISL3 family transposase	-
GJR85_RS00880 (GJR85_00880)	pepF	184346..186142 (-)	1797	WP_156661151.1	oligoendopeptidase F	Regulator

Sequence

Protein

• Length: 598 a.a.
• Molecular weight: 68447.57 Da
• Isoelectric Point: 5.3086

>NTDB_id=405120 GJR85_RS00880 WP_156661151.1 184346..186142(-) (pepF) [Lactobacillus acetotolerans strain CN247]
MAIPKRAEVPENLRWDLTRVFKSDQDWKDEYNKVKSAVQRLSNLKRNFTKSGKDLYDALTKILAVARHLEKVYTYASMAS
DVDTSDAHYLGYVSQVQSLASQFETNTSFINPGVLSISDEKLQQFKKDEPRLKNYDHWLEQITKKRPHTLPANEEKLIAG
AGDAMGVSENTFNVLTNSDMEYGYVQTDDGQMVQLTDGLYSQLIQSQNRNVRKGAFDVMYATYGQFENTLASTLSGVVKE
HNYNARVHNYDSARSAALAENGIPTVVYDTLIKEVNDHIDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPALSYTFEEA
KKEAKKALAPLGDDYLKHVDYIFNNRDIDVVESQNKVTGAYSGGCYDTDPYELLNWEDNIDSLYTLVHETGHSVHSLYTR
ENQPYIYGDYPIFVAEIASTTNENILTEYFLDHIKDSKTKAFILNYYLDSFKGTLYRQTQFAEFEQFIHEADAKGEPLTV
DKLNQFYGDLNQHYYGNAVEPGGDITKEWARIPHFYYDFYVYQYATGFAAASALANKVVHGTDKQRKAYIGFLKAGSSDY
PTEIMKRAGVDMTKPDYLEDAFNTFAKRLDEFENLIEK

Nucleotide

• Length: 1797 bp

>NTDB_id=405120 GJR85_RS00880 WP_156661151.1 184346..186142(-) (pepF) [Lactobacillus acetotolerans strain CN247]
ATGGCAATTCCAAAAAGGGCAGAAGTTCCAGAAAATTTGAGATGGGACCTTACCCGCGTCTTCAAGTCCGACCAAGATTG
GAAAGATGAATATAACAAAGTAAAAAGCGCAGTGCAAAGGTTAAGCAACTTAAAAAGAAACTTTACTAAATCCGGGAAAG
ATCTTTACGATGCTTTAACCAAAATATTGGCTGTGGCCCGTCATTTAGAAAAAGTTTACACATATGCCAGCATGGCTAGC
GACGTAGATACATCTGATGCGCATTATTTAGGCTATGTCAGCCAGGTACAAAGCTTGGCCAGCCAATTTGAAACGAACAC
TTCCTTTATTAATCCGGGAGTTTTGAGTATTTCTGATGAAAAACTTCAGCAATTTAAAAAAGATGAACCAAGATTAAAGA
ATTACGACCACTGGCTTGAACAAATCACTAAGAAACGTCCGCATACCTTGCCCGCTAATGAAGAAAAATTAATAGCAGGA
GCTGGAGACGCGATGGGTGTGTCCGAAAACACCTTTAACGTCTTAACCAACTCTGATATGGAATATGGCTACGTTCAAAC
TGATGATGGACAAATGGTACAGCTAACCGACGGACTATATTCGCAACTCATCCAGTCTCAAAATCGTAATGTCCGTAAGG
GTGCTTTCGATGTCATGTATGCAACTTACGGTCAATTTGAAAACACCCTGGCCTCAACTCTTTCTGGGGTTGTAAAAGAG
CACAATTATAATGCACGCGTACACAACTATGATTCTGCCCGCAGTGCCGCCCTCGCAGAAAATGGTATCCCAACAGTAGT
TTATGACACCTTAATCAAGGAAGTTAATGATCATATAGACCTGCTGCACAGGTACGTTGCCCTTCGTAAAAAGATCTTGG
GATTAAAGGATTTGCAAATGTGGGACATGTACGTTCCGTTAACTGGAAAGCCCGCACTTTCTTATACCTTCGAAGAAGCC
AAAAAAGAGGCTAAGAAAGCTTTAGCTCCACTTGGCGATGATTACCTTAAGCACGTTGACTACATCTTTAATAACCGTGA
TATTGACGTTGTCGAGTCACAAAATAAAGTTACCGGCGCATATTCCGGTGGCTGCTACGATACTGACCCGTACGAACTAC
TTAATTGGGAAGACAATATCGATTCACTCTATACTTTAGTCCACGAAACAGGCCACTCCGTTCACAGCTTATACACGCGG
GAGAATCAGCCTTACATTTACGGTGACTATCCTATCTTTGTAGCCGAAATTGCTTCAACTACTAATGAAAATATCTTGAC
GGAATACTTTTTAGATCATATTAAAGATTCTAAAACCAAAGCCTTCATTTTGAACTATTACCTTGATTCCTTTAAGGGTA
CCTTATACAGGCAGACACAATTTGCTGAGTTTGAACAGTTTATTCACGAAGCAGATGCTAAGGGTGAACCATTAACGGTA
GACAAGTTAAACCAGTTCTATGGTGATCTGAACCAACACTATTATGGTAATGCGGTTGAGCCTGGTGGCGATATCACTAA
AGAATGGGCAAGAATTCCCCACTTCTACTATGACTTTTACGTCTACCAATACGCTACCGGATTTGCGGCTGCCAGTGCAC
TTGCTAATAAGGTTGTTCACGGAACAGATAAACAGAGAAAAGCTTATATCGGCTTCCTAAAAGCAGGATCTAGCGACTAC
CCAACTGAAATCATGAAGAGGGCTGGGGTTGATATGACTAAACCTGACTACTTAGAAGATGCATTCAATACTTTTGCAAA
ACGTCTAGATGAATTTGAAAATTTAATTGAAAAATAA

Domains

Predicted by InterproScan.

• Oligopeptidase F (Peptidase_M3_N) (115-181)

• Peptidase family M3 (Peptidase_M3) (203-583)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pepF	Streptococcus salivarius strain HSISS4	51.096	99.164	0.507