Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GN312_RS18460 Genome accession   NZ_CP046527
Coordinates   3772536..3773165 (+) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli strain RM19259     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3767536..3778165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GN312_RS18440 (GN312_18440) ycbZ 3767938..3769698 (-) 1761 WP_000156526.1 Lon protease family protein -
  GN312_RS18445 (GN312_18445) matP 3769884..3770336 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GN312_RS18450 (GN312_18450) ompA 3770411..3771451 (-) 1041 WP_000750416.1 porin OmpA -
  GN312_RS18455 (GN312_18455) sulA 3771808..3772317 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GN312_RS18460 (GN312_18460) sxy/tfoX 3772536..3773165 (+) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GN312_RS18465 (GN312_18465) yccS 3773128..3775290 (-) 2163 WP_000875023.1 YccS family putative transporter -
  GN312_RS18470 (GN312_18470) yccF 3775300..3775746 (-) 447 WP_001261230.1 YccF domain-containing protein -
  GN312_RS18475 (GN312_18475) helD 3775869..3777923 (+) 2055 WP_001301436.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=405115 GN312_RS18460 WP_000839159.1 3772536..3773165(+) (sxy/tfoX) [Escherichia coli strain RM19259]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=405115 GN312_RS18460 WP_000839159.1 3772536..3773165(+) (sxy/tfoX) [Escherichia coli strain RM19259]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment