Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GOM46_RS07775 Genome accession   NZ_CP046525
Coordinates   1584888..1586657 (-) Length   589 a.a.
NCBI ID   WP_235083520.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579888..1591657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS07745 (GOM46_07690) - 1580478..1580843 (-) 366 WP_000216443.1 Asp23/Gls24 family envelope stress response protein -
  GOM46_RS07750 (GOM46_07695) rpmB 1580996..1581184 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  GOM46_RS07755 (GOM46_07700) - 1581291..1581965 (-) 675 WP_235083516.1 LiaF transmembrane domain-containing protein -
  GOM46_RS07760 (GOM46_07705) - 1581970..1582416 (-) 447 WP_235083517.1 LytTR family DNA-binding domain-containing protein -
  GOM46_RS07765 (GOM46_07710) - 1582535..1583038 (-) 504 WP_235083518.1 phosphatase PAP2 family protein -
  GOM46_RS07770 (GOM46_07715) rcrQ 1583138..1584898 (-) 1761 WP_235083519.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS07775 (GOM46_07720) rcrP 1584888..1586657 (-) 1770 WP_235083520.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS07780 (GOM46_07725) - 1586641..1587102 (-) 462 WP_235083521.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM46_RS07785 (GOM46_07730) - 1587312..1587986 (+) 675 WP_235083522.1 hypothetical protein -
  GOM46_RS07790 (GOM46_07735) - 1588031..1588747 (-) 717 WP_006146163.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM46_RS07795 (GOM46_07740) - 1588844..1590214 (-) 1371 WP_235083523.1 MATE family efflux transporter -
  GOM46_RS07800 (GOM46_07745) - 1590323..1590877 (+) 555 WP_235083524.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65502.92 Da        Isoelectric Point: 6.3879

>NTDB_id=405089 GOM46_RS07775 WP_235083520.1 1584888..1586657(-) (rcrP) [Streptococcus infantis strain SO]
MKKLAKRITGKEWGMILLTMLFTCFSVYLELEVPTYISEITALLGTPGTQLDALWSPAIKMIGLSLLAFLSSVTVGFFAA
RVAASYTAHLRSDIFNRVLDYSQTEIKRFSIPSLLTRTTNDITQIQMLFTMGLQVITRGPIMAIWAIGKILGKSEYWLWA
VVIAVIVNVLMTTVLLTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDKKFEEANEEVTRLNLFVNRLMAI
MNPIMMAISSGLSLAIYWIGAYIINDASLTDRLPLFSDMVVFMSYAMQVVMGFLLMSALFFVLPRTLVSAGRINQVLDLH
SSIKNPSQPQTAESSVKGQVEYRDVTFRYSKNSEAVVEHVSFKAEAGQTVAFIGSTGSGKSTLVNLLPRFYDVSDGEILV
DGVNVQNYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGKSPETPLSETAMWQALELAQSKSFIEDKEAGLNSEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQELAEKTQSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=405089 GOM46_RS07775 WP_235083520.1 1584888..1586657(-) (rcrP) [Streptococcus infantis strain SO]
ATGAAGAAACTCGCTAAGCGTATCACAGGAAAAGAGTGGGGAATGATTCTCTTGACCATGCTCTTTACCTGTTTCTCGGT
CTATCTAGAGTTAGAAGTACCGACTTACATTTCAGAAATTACAGCATTACTTGGGACACCAGGGACGCAGTTGGATGCAC
TTTGGTCACCAGCTATTAAGATGATAGGCTTGTCTCTACTTGCTTTTCTGTCATCCGTTACTGTTGGATTTTTTGCCGCT
CGCGTTGCAGCATCCTACACGGCTCATCTGCGTAGTGATATTTTTAATCGTGTCTTGGATTATTCTCAGACAGAAATTAA
ACGTTTTTCAATCCCAAGTCTGTTGACTCGGACGACAAATGATATTACGCAGATCCAGATGCTCTTTACTATGGGACTCC
AGGTAATCACTCGTGGACCTATTATGGCTATCTGGGCCATTGGAAAAATCCTTGGGAAGTCTGAGTACTGGCTCTGGGCA
GTAGTAATCGCTGTTATCGTCAATGTTTTGATGACAACTGTTCTCCTGACTCTGGCCTTTCCGAAACAATCTGTCATCCA
AAAATTGACAGATAAACTCAATAGTATTACTCGTGAAAGTTTGACAGGGATTCGAGTGGTGCGTGCTTATAATGCCGAGG
ATTATCAAGACAAGAAATTCGAAGAAGCCAATGAGGAAGTCACTCGTCTTAATCTCTTTGTCAACCGTTTGATGGCCATT
ATGAATCCTATTATGATGGCGATTTCGAGTGGCTTGAGTCTAGCTATCTACTGGATTGGAGCCTATATCATCAACGATGC
TAGCCTGACAGACCGTCTACCACTCTTTAGTGATATGGTGGTCTTCATGTCTTATGCCATGCAGGTCGTGATGGGCTTCT
TGCTCATGAGTGCTCTCTTTTTCGTCCTTCCTCGTACCTTGGTTTCTGCAGGACGTATCAATCAAGTGCTAGACTTGCAT
TCTTCTATTAAAAATCCTAGTCAACCACAGACTGCAGAATCATCTGTAAAAGGTCAAGTGGAATATCGTGACGTAACCTT
CCGTTACTCTAAAAACTCAGAAGCAGTTGTGGAACATGTCAGCTTCAAGGCAGAAGCTGGTCAAACGGTCGCCTTTATCG
GTTCAACTGGTTCTGGTAAATCTACGCTTGTGAACCTCTTGCCTCGTTTTTATGACGTTTCGGATGGGGAAATCCTAGTA
GACGGTGTCAATGTACAGAACTATGATTTGGAAGACTTGCGGAATAAAGTCGGCTATATCCCACAAAAAGCTGTTCTCTT
CTCAGGAGATGTCAAGGGAAATCTAGACTTTGGTAAGAGTCCAGAAACTCCGCTAAGCGAGACTGCTATGTGGCAAGCTC
TTGAGTTGGCCCAGTCTAAAAGCTTCATCGAGGATAAGGAAGCAGGTCTAAACTCAGAAGTGGCTCAAGGTGGGACTAAC
TTCTCAGGAGGTCAAAGACAACGTTTGGCTATTGCGCGTGCCTTGGCTCGTAAACCAGAAATTCTCATTTTTGATGATTC
ATTCTCGGCCTTGGACTACAAGACTGACCGTATCTTGCGCCAAGAACTAGCTGAAAAAACTCAATCTATGACCAAGTTGA
TCGTTGCCCAACGTATCTCAACCATCATGGATGCAGACTTGATCTTAGTCTTAGATCAGGGTAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTTGCGACCAACGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

64.892

100

0.662

Multiple sequence alignment