Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM46_RS07770 Genome accession   NZ_CP046525
Coordinates   1583138..1584898 (-) Length   586 a.a.
NCBI ID   WP_235083519.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578138..1589898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS07730 (GOM46_07675) - 1578199..1578393 (-) 195 WP_000709296.1 hypothetical protein -
  GOM46_RS07735 (GOM46_07680) - 1578390..1578596 (-) 207 WP_025170070.1 hypothetical protein -
  GOM46_RS07740 (GOM46_07685) - 1578808..1580475 (-) 1668 WP_235083515.1 DAK2 domain-containing protein -
  GOM46_RS07745 (GOM46_07690) - 1580478..1580843 (-) 366 WP_000216443.1 Asp23/Gls24 family envelope stress response protein -
  GOM46_RS07750 (GOM46_07695) rpmB 1580996..1581184 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  GOM46_RS07755 (GOM46_07700) - 1581291..1581965 (-) 675 WP_235083516.1 LiaF transmembrane domain-containing protein -
  GOM46_RS07760 (GOM46_07705) - 1581970..1582416 (-) 447 WP_235083517.1 LytTR family DNA-binding domain-containing protein -
  GOM46_RS07765 (GOM46_07710) - 1582535..1583038 (-) 504 WP_235083518.1 phosphatase PAP2 family protein -
  GOM46_RS07770 (GOM46_07715) rcrQ 1583138..1584898 (-) 1761 WP_235083519.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS07775 (GOM46_07720) rcrP 1584888..1586657 (-) 1770 WP_235083520.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS07780 (GOM46_07725) - 1586641..1587102 (-) 462 WP_235083521.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM46_RS07785 (GOM46_07730) - 1587312..1587986 (+) 675 WP_235083522.1 hypothetical protein -
  GOM46_RS07790 (GOM46_07735) - 1588031..1588747 (-) 717 WP_006146163.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64477.06 Da        Isoelectric Point: 4.8950

>NTDB_id=405088 GOM46_RS07770 WP_235083519.1 1583138..1584898(-) (rcrQ) [Streptococcus infantis strain SO]
MENKKMSFWKQYKPFLAGLQLPLLVAVVAAVCSSIITVYGPTKIKEITNLISDGLATEIDLVAVSSIASFLAILYVLGAI
LNYTQAYIFSTSIQHFSKRLRTAIAEKINRLPLAYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGTVISASFLLIAVLITM
FGMNWILALVTVVSTLVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVDTTKETFAGLNQDLHDS
IWKSQFISGIMMPAMFFVGNFSYVLVVIVGAALALEGHISIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVFE
FLGEAEMEDESHKETQLSGMKGEVVFDQVSFGYTPERTIIHDFSATAHAGQKIAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKSMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQTGISDERMIEAAKAVGIHHFITTLPDGYDTVLDDTVTL
SVGQKQLLTIARVLLKNAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HEELMDQGGFYADLYNSQFTEDEVEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=405088 GOM46_RS07770 WP_235083519.1 1583138..1584898(-) (rcrQ) [Streptococcus infantis strain SO]
ATGGAAAATAAGAAGATGTCCTTTTGGAAACAATATAAACCTTTTCTAGCAGGTCTCCAACTTCCTCTACTAGTTGCGGT
TGTGGCGGCTGTATGTTCAAGCATCATCACGGTTTATGGACCAACTAAGATTAAGGAAATCACCAACTTGATTTCAGATG
GCTTGGCTACAGAAATCGATTTGGTAGCTGTGTCAAGTATCGCCAGCTTTTTAGCTATTTTGTATGTGCTTGGTGCTATT
CTCAACTATACACAAGCCTATATCTTTTCAACGAGTATCCAACATTTTTCAAAACGTTTGCGGACGGCTATCGCTGAAAA
GATTAATCGTTTGCCTCTTGCTTACTTTGACCGTCATTCTCAAGGGGACACTCTTTCACGTGTAACCAATGACGTTGATA
CAGCAGCACAGTCCCTCAACCAAAGTCTAGGGACCGTTATCTCAGCTAGCTTCTTGCTAATCGCTGTTTTGATTACCATG
TTTGGCATGAACTGGATTTTGGCATTGGTAACAGTTGTTTCAACCCTTGTAGGTTTTGCTGCTGTCTCAGTCATTATGGC
TAAGTCACAGGGTTACTTTAAAGCCCAACAAAACAACCTAGCAGCTGTAAACGGCTATGTGGAAGAAATGTACTCTGGCC
ACAATGTGGTGACCAGCTATAATGCTGTGGATACCACTAAAGAAACATTCGCAGGATTGAATCAAGACCTACATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATCATGATGCCCGCTATGTTCTTTGTCGGAAACTTTAGTTATGTTTTGGTTGT
TATCGTCGGTGCTGCCTTGGCTCTTGAAGGCCATATCAGTATTGGGATTATCGTAGCTTTTATGGTTTATGTTCGTACCT
TCTCACAACCCCTATCACAAATTGCTCAAGGGATTACCAGCTTGCAACAGGCTAGTGCAGCTATGACACGTGTTTTTGAG
TTTCTAGGAGAAGCTGAGATGGAAGACGAATCTCATAAGGAAACACAATTGTCTGGTATGAAGGGTGAAGTAGTCTTTGA
TCAAGTTTCCTTTGGTTACACACCTGAGCGAACCATCATTCATGACTTTTCTGCGACAGCTCATGCAGGGCAAAAGATTG
CCATTGTTGGACCAACTGGAGCTGGGAAGACTACTATTGTCAACCTCTTGATGAAGTTCTATGAGATTGATAAGGGAAGT
ATTCGCATCGATGGTGTGGATACCAAGTCTATGAAACGTTCAGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGATAC
TTGGCTCTTTGAAGGAACCATTCGTGATAATCTCATCTACAACCAAACAGGGATTAGTGATGAACGAATGATTGAAGCAG
CAAAAGCAGTAGGAATTCACCACTTTATCACAACCTTGCCTGATGGATACGATACAGTCTTGGATGATACGGTGACCTTG
TCAGTCGGGCAGAAACAGCTCTTGACTATTGCTCGTGTCCTTCTCAAGAATGCACCGCTCTTGATTCTGGACGAAGCAAC
ATCCTCAGTTGATACACGTACAGAGGAGTTGATTCAGAAAGCCATGGACCGTTTGATGGAGGGACGCACATCCTTTGTCA
TCGCCCATCGCTTGTCAACTATCCGTAATGCCGACTTGATTTTGGTTATGAAGGACGGAAATATCATCGAACAAGGCAAT
CATGAGGAACTCATGGATCAGGGTGGTTTCTATGCTGATCTCTACAATAGTCAATTTACAGAAGATGAAGTAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.838

99.317

0.664

Multiple sequence alignment