Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GOM46_RS01660 Genome accession   NZ_CP046525
Coordinates   325394..326125 (+) Length   243 a.a.
NCBI ID   WP_235083775.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 320394..331125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01635 (GOM46_01620) dnaK 320440..322263 (+) 1824 WP_235083769.1 molecular chaperone DnaK -
  GOM46_RS01640 (GOM46_01625) dnaJ 322680..323816 (+) 1137 WP_016466796.1 molecular chaperone DnaJ -
  GOM46_RS01645 (GOM46_01630) - 323894..324535 (-) 642 WP_235083771.1 hypothetical protein -
  GOM46_RS01650 (GOM46_01635) - 324619..324906 (-) 288 WP_235083773.1 hypothetical protein -
  GOM46_RS01655 (GOM46_01640) - 324916..325326 (-) 411 WP_235083774.1 HIT family protein -
  GOM46_RS01660 (GOM46_01645) pptA 325394..326125 (+) 732 WP_235083775.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS01665 (GOM46_01650) pptB 326122..327171 (+) 1050 WP_235083776.1 ABC transporter permease Regulator
  GOM46_RS01670 (GOM46_01655) ccrZ 327219..328013 (+) 795 WP_235083777.1 cell cycle regulator CcrZ -
  GOM46_RS01675 (GOM46_01660) trmB 328010..328645 (+) 636 WP_235083779.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GOM46_RS01680 (GOM46_01665) rimP 328772..329251 (+) 480 WP_235083780.1 ribosome maturation factor RimP -
  GOM46_RS01685 (GOM46_01670) nusA 329294..330430 (+) 1137 WP_006150238.1 transcription termination factor NusA -
  GOM46_RS01690 (GOM46_01675) rnpM 330452..330745 (+) 294 WP_006144965.1 RNase P modulator RnpM -
  GOM46_RS01695 (GOM46_01680) - 330738..331037 (+) 300 WP_006150377.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27059.59 Da        Isoelectric Point: 4.8973

>NTDB_id=405050 GOM46_RS01660 WP_235083775.1 325394..326125(+) (pptA) [Streptococcus infantis strain SO]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGEIKIDGLTLGENATSYRKKIGYIP
ETPSLYEELTLREHIETVAMAYGIEQTIAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKKKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGNLDQLREAFAMPDASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=405050 GOM46_RS01660 WP_235083775.1 325394..326125(+) (pptA) [Streptococcus infantis strain SO]
ATGTTAGAAATTAAAAATCTGACAGGAGGCTATGTTCATGTCCCTGTCTTGAAAGATGTGTCCTTTACAGTTGAGAGCGG
ACAGTTGGTAGGTTTGATAGGTTTAAATGGTGCGGGGAAATCAACGACTATCAACGAGATTATTGGTCTTTTGACGCCAT
ATAGTGGGGAGATTAAGATTGACGGATTGACTCTAGGAGAGAATGCTACGAGCTATCGTAAGAAGATTGGTTATATCCCT
GAAACTCCTAGCTTGTATGAAGAACTAACGCTCAGAGAACATATTGAGACGGTTGCTATGGCCTACGGTATTGAACAAAC
TATCGCTTTCGAACGTGTAGAACCGCTTTTAAAAATGTTTCGTTTGGACCAGAAATTGGATTGGTTCCCGGTTCATTTTT
CCAAAGGTATGAAGCAAAAGGTTATGATTATCTGTGCCTTTGTCGTAGATCCAAGTCTCTTTATCGTAGACGAGCCTTTC
CTTGGCCTCGACCCCTTGGCGATTTCAGACTTGATTCAACTTCTAGAAGTGGAAAAGAAAAAAGGCAAGTCCATTCTCAT
GAGTACCCACGTCCTTGATTCAGCTGAAAAGATGTGTGACTCTTTTGTCATTCTCCACAAAGGTCAAGTTAGGGCTAAAG
GAAATCTTGATCAACTCCGAGAAGCCTTTGCCATGCCAGATGCAAGCCTTAATGATATCTATTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.859

99.177

0.733
  pptA Streptococcus thermophilus LMD-9

73.444

99.177

0.728

Multiple sequence alignment