Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GOM46_RS00100 Genome accession   NZ_CP046525
Coordinates   24464..25828 (+) Length   454 a.a.
NCBI ID   WP_235084128.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19464..30828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS00060 comW 19834..20070 (+) 237 WP_235083594.1 sigma(X)-activator ComW -
  GOM46_RS00065 (GOM46_00065) - 20310..21596 (+) 1287 WP_235083595.1 adenylosuccinate synthase -
  GOM46_RS00070 (GOM46_00070) tadA 21796..22263 (+) 468 WP_006150521.1 tRNA adenosine(34) deaminase TadA -
  GOM46_RS00080 (GOM46_00080) - 22449..22892 (+) 444 WP_084938696.1 dUTP diphosphatase -
  GOM46_RS00085 (GOM46_00085) - 22902..23357 (+) 456 WP_235083596.1 isochorismatase family protein -
  GOM46_RS00090 (GOM46_00090) - 23376..23915 (+) 540 WP_235083597.1 histidine phosphatase family protein -
  GOM46_RS00095 (GOM46_00095) - 23932..24423 (+) 492 WP_235083598.1 hypothetical protein -
  GOM46_RS00100 (GOM46_00100) radA 24464..25828 (+) 1365 WP_235084128.1 DNA repair protein RadA Machinery gene
  GOM46_RS00105 (GOM46_00105) - 25899..26594 (+) 696 WP_235083599.1 TIGR00266 family protein -
  GOM46_RS00110 (GOM46_00110) - 26757..27251 (+) 495 WP_006150527.1 beta-class carbonic anhydrase -
  GOM46_RS00115 (GOM46_00115) - 27467..28435 (+) 969 WP_006150516.1 ribose-phosphate diphosphokinase -
  GOM46_RS00120 (GOM46_00120) abpA 28707..29351 (+) 645 WP_235083600.1 amylase-binding adhesin AbpA -
  GOM46_RS00125 (GOM46_00125) srtB 29428..30270 (+) 843 WP_235083601.1 class B sortase, LPKTxAVK-specific -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49688.22 Da        Isoelectric Point: 5.8797

>NTDB_id=405028 GOM46_RS00100 WP_235084128.1 24464..25828(+) (radA) [Streptococcus infantis strain SO]
MIAKKKATFVCQNCEYNSPKYLGRCPNCGAWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSEVFLEERLDDATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGIKPPKEIQVIGVTTIQEVLKKVFS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=405028 GOM46_RS00100 WP_235084128.1 24464..25828(+) (radA) [Streptococcus infantis strain SO]
ATCATAGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGAATATAATTCACCCAAGTATTTAGGACGCTGTCCAAA
CTGTGGAGCCTGGTCTTCTTTTGTGGAGGAAGTTGAGGTTGCAGAAGTCAAAAATGCGCGTGTGTCCTTGACAGGTGAGA
AAACCAAGCCCATGAAATTGGCTGAGGTGACTTCTATCAATGTCAATCGAACTAAGACTGAGATGGAGGAATTTAACCGA
GTGCTTGGTGGCGGTGTGGTGCCAGGAAGTCTTGTCCTCATTGGTGGGGATCCAGGGATTGGGAAATCAACCCTTCTCTT
ACAAGTATCAACCCAGTTGTCTCAAGTAGGAACAGTTCTCTATGTTAGTGGGGAGGAGTCTGCTCAACAGATCAAACTCC
GTGCAGAGCGCTTGGGTGATATCGACAGTGAGTTTTATCTCTATGCTGAGACCAATATGCAGAGCGTTCGTGCAGAAGTC
GAACGTATCCAGCCGGATTTCCTTATCATCGATTCGATTCAGACCATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTC
AGTTTCCCAGGTACGTGAAGTAACCGCTGAACTCATGCAGCTGGCTAAGACCAATAACATTGCTATCTTTATCGTAGGGC
ATGTTACAAAGGAAGGAACCTTGGCTGGACCTCGTATGTTGGAACATATGGTGGATACAGTGCTTTACTTTGAAGGGGAA
CGACACCATACCTTCCGTATCTTGAGAGCAGTCAAAAATCGTTTTGGCTCGACAAATGAGATTGGAATCTTTGAGATGCA
GTCAGGTGGATTGGTTGAGGTTCTCAATCCAAGTGAGGTCTTTCTAGAAGAACGTTTGGACGATGCTACTGGTTCATCAA
TTGTTGTGACTATGGAAGGGACACGTCCGATTTTGGCGGAGGTTCAGGCTCTGGTGACACCGACCATGTTTGGAAATGCT
AAGCGTACGACGACAGGGCTTGATTTCAATCGCGCTAGTCTGATTATGGCTGTTTTGGAAAAACGTGCAGGGCTTCTCTT
GCAAAATCAGGATGCCTATCTTAAATCAGCTGGTGGTGTCAAATTAGATGAGCCTGCTATTGACCTGGCTGTTGCAGTTG
CTATTGCTTCGAGTTACAAGGACAAACCAACCAATCCTCAGGAATGTTTTGTAGGAGAGTTGGGCTTGACGGGAGAGATT
CGGCGCGTAAATCGTATCGAACAACGAATCAACGAAGCTGCTAAGCTTGGATTCACAAAAATCTATGTACCAAAAAATTC
CCTAACAGGTATTAAGCCACCTAAGGAAATTCAGGTGATTGGGGTGACGACTATTCAGGAAGTCTTGAAAAAAGTATTCT
CCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.234

99.78

0.98
  radA Streptococcus mitis SK321

98.234

99.78

0.98
  radA Streptococcus pneumoniae Rx1

98.234

99.78

0.98
  radA Streptococcus pneumoniae D39

98.234

99.78

0.98
  radA Streptococcus pneumoniae R6

98.234

99.78

0.98
  radA Streptococcus pneumoniae TIGR4

98.234

99.78

0.98
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626

Multiple sequence alignment