Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GOM47_RS01875 Genome accession   NZ_CP046524
Coordinates   367829..368560 (+) Length   243 a.a.
NCBI ID   WP_235080890.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 362829..373560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS01850 (GOM47_01855) - 364330..364962 (+) 633 WP_235080886.1 DJ-1/PfpI family protein -
  GOM47_RS01855 (GOM47_01860) dnaJ 365122..366258 (+) 1137 WP_235080887.1 molecular chaperone DnaJ -
  GOM47_RS01860 (GOM47_01865) - 366340..366993 (-) 654 WP_235080888.1 hypothetical protein -
  GOM47_RS01865 (GOM47_01870) - 367063..367341 (-) 279 WP_235080889.1 hypothetical protein -
  GOM47_RS01870 (GOM47_01875) - 367351..367761 (-) 411 WP_033679703.1 HIT family protein -
  GOM47_RS01875 (GOM47_01880) pptA 367829..368560 (+) 732 WP_235080890.1 ABC transporter ATP-binding protein Regulator
  GOM47_RS01880 (GOM47_01885) - 368557..369606 (+) 1050 WP_235080891.1 ABC transporter permease -
  GOM47_RS01885 (GOM47_01890) ccrZ 369654..370448 (+) 795 WP_235080892.1 cell cycle regulator CcrZ -
  GOM47_RS01890 (GOM47_01895) trmB 370445..371080 (+) 636 WP_235080893.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GOM47_RS01895 (GOM47_01900) rimP 371207..371686 (+) 480 WP_000338696.1 ribosome maturation factor RimP -
  GOM47_RS01900 (GOM47_01905) nusA 371730..372866 (+) 1137 WP_235080894.1 transcription termination factor NusA -
  GOM47_RS01905 (GOM47_01910) rnpM 372888..373181 (+) 294 WP_000857553.1 RNase P modulator RnpM -
  GOM47_RS01910 (GOM47_01915) - 373174..373473 (+) 300 WP_001041396.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27287.67 Da        Isoelectric Point: 4.6407

>NTDB_id=404979 GOM47_RS01875 WP_235080890.1 367829..368560(+) (pptA) [Streptococcus oralis strain SOT]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGEIKINGLTQREDATNYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQNIAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSFFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAQGNLQQLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=404979 GOM47_RS01875 WP_235080890.1 367829..368560(+) (pptA) [Streptococcus oralis strain SOT]
ATGTTAGAAATTAAAAACCTGACAGGAGGCTATGTTCACGTCCCTGTCTTGAAAGATGTGTCCTTTACAGTTGAAAGTGG
GCAGTTGGTTGGTTTGATTGGTCTTAACGGTGCTGGGAAATCAACGACAATCAATGAGATTATTGGTCTGTTGACACCTT
ACAGTGGGGAAATCAAGATTAACGGTCTCACCCAGCGAGAAGATGCGACCAACTACCGCAAACAGATTGGCTACATCCCA
GAAACGCCTAGCTTGTATGAGGAATTGACTCTTAGAGAGCATATTGAAACGGTGGCTATGGCTTACGGTATTGAGCAGAA
TATAGCTTTTGAGCGAGTAGAACCTTTGTTAAAAATGTTCCGTCTGGACCAGAAATTGGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTTTTTTCATCGTGGACGAGCCTTTC
CTTGGTCTCGATCCGCTTGCGATTGCGGACCTGATTCAGCTTCTAGAAGTAGAAAAGCAAAAGGGCAAATCCATTCTCAT
GAGTACCCACGTGCTGGACTCGGCGGAGAAGATGTGTGATGCCTTTGTTATTCTCCACAAGGGGGAGGTGAGGGCTCAGG
GGAACCTCCAGCAACTGCGCGAAGCCTTTGACATGCCTGAAGCGAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment