Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GOM47_RS00140 Genome accession   NZ_CP046524
Coordinates   25644..27005 (+) Length   453 a.a.
NCBI ID   WP_414930294.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20644..32005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS00105 comW 20960..21193 (+) 234 WP_061419175.1 sigma(X)-activator ComW -
  GOM47_RS00110 (GOM47_00105) - 21439..22725 (+) 1287 WP_235081260.1 adenylosuccinate synthase -
  GOM47_RS00115 (GOM47_00110) - 23205..23750 (-) 546 WP_235080683.1 hypothetical protein -
  GOM47_RS00120 (GOM47_00115) tadA 24016..24483 (+) 468 WP_235080684.1 tRNA adenosine(34) deaminase TadA -
  GOM47_RS00130 (GOM47_00125) - 24670..25113 (+) 444 WP_235080685.1 dUTP diphosphatase -
  GOM47_RS00135 (GOM47_00130) - 25115..25630 (+) 516 WP_000691243.1 histidine phosphatase family protein -
  GOM47_RS00140 (GOM47_00135) radA 25644..27005 (+) 1362 WP_414930294.1 DNA repair protein RadA Machinery gene
  GOM47_RS00145 (GOM47_00140) - 27078..27572 (+) 495 WP_235080686.1 beta-class carbonic anhydrase -
  GOM47_RS00150 (GOM47_00145) - 27786..28754 (+) 969 WP_235080687.1 ribose-phosphate diphosphokinase -
  GOM47_RS00155 (GOM47_00150) - 28874..29311 (+) 438 WP_033583537.1 CoA-binding protein -
  GOM47_RS00160 (GOM47_00155) - 29339..30349 (-) 1011 WP_235080688.1 YeiH family protein -
  GOM47_RS00165 (GOM47_00160) - 30503..31672 (+) 1170 WP_235080689.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49419.86 Da        Isoelectric Point: 6.1885

>NTDB_id=404958 GOM47_RS00140 WP_414930294.1 25644..27005(+) (radA) [Streptococcus oralis strain SOT]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTDMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=404958 GOM47_RS00140 WP_414930294.1 25644..27005(+) (radA) [Streptococcus oralis strain SOT]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCAAAATATCTAGGGCGTTGTCCTAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACTTCCATCAATGTCAATCGAACAAAGACGGATATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCAGGAATCGGGAAATCAACCCTTCTCTTACA
AGTATCGACTCAGCTGTCCCAAGTAGGGACTGTTCTCTATGTCAGTGGGGAGGAGTCTGCTCAGCAGATTAAACTCCGTG
CAGAGCGCTTGGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTGGAG
CGCATCCAACCAGATTTTCTCATCATCGACTCTATCCAGACTATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
GTCTCAGGTGCGTGAGGTGACCGCTGAGCTTATGCAGCTGGCTAAGACTAATAACATTGCCATTTTTATCGTAGGGCATG
TGACCAAGGAAGGGACCTTGGCTGGTCCGCGTATGTTGGAGCATATGGTAGATACAGTGCTTTACTTTGAAGGGGAACGT
CACCATACCTTTCGTATCTTGAGAGCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCAGTC
GGGCGGATTGGTTGAGGTGCTCAATCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCTACTGGCTCGTCAATCG
TTGTGACCATGGAAGGGACCCGTCCGATTTTAGCAGAAGTTCAAGCCTTGGTGACACCGACTATGTTTGGAAATGCCAAG
CGTACTACGACAGGTCTTGATTTCAATCGTGCGAGTCTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGGGTCAAATTGGATGAGCCCGCTATTGATTTAGCCGTTGCAGTTGCTA
TTGCTTCGAGTTACAAGGACAAGCCTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAGATTCGG
CGCGTGAATCGTATCGAACAACGTATCAATGAAGCGGCAAAACTGGGCTTTACCAAGATTTATGTACCCAAGAATTCCTT
GACAGGAATCACTCCACCCAAGGAAATTGAAGTCATTGGTGTGACGACTATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.338

100

0.993
  radA Streptococcus mitis SK321

99.117

100

0.991
  radA Streptococcus pneumoniae Rx1

99.117

100

0.991
  radA Streptococcus pneumoniae D39

99.117

100

0.991
  radA Streptococcus pneumoniae R6

99.117

100

0.991
  radA Streptococcus pneumoniae TIGR4

99.117

100

0.991
  radA Bacillus subtilis subsp. subtilis str. 168

63.576

100

0.636

Multiple sequence alignment