Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LBUC_RS03510 Genome accession   NC_015428
Coordinates   724723..726534 (+) Length   603 a.a.
NCBI ID   WP_013727497.1    Uniprot ID   -
Organism   Lentilactobacillus buchneri NRRL B-30929     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 719723..731534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBUC_RS03490 (Lbuc_0672) - 719768..720460 (+) 693 WP_013727493.1 response regulator transcription factor -
  LBUC_RS03495 (Lbuc_0673) - 720457..721767 (+) 1311 WP_013727494.1 cell wall metabolism sensor histidine kinase WalK -
  LBUC_RS03500 (Lbuc_0674) - 721855..723393 (-) 1539 WP_013727495.1 gamma-glutamylcysteine synthetase -
  LBUC_RS03505 (Lbuc_0675) - 723549..724688 (+) 1140 WP_013727496.1 competence protein CoiA -
  LBUC_RS03510 (Lbuc_0676) pepF 724723..726534 (+) 1812 WP_013727497.1 oligoendopeptidase F Regulator
  LBUC_RS03515 (Lbuc_0677) - 726608..727228 (-) 621 WP_013727498.1 DsbA family protein -
  LBUC_RS03520 (Lbuc_0678) - 727443..728096 (+) 654 WP_013727499.1 GTP pyrophosphokinase family protein -
  LBUC_RS03525 (Lbuc_0679) - 728074..728886 (+) 813 WP_013727500.1 NAD kinase -
  LBUC_RS03530 (Lbuc_0680) - 728879..729769 (+) 891 WP_013727501.1 RluA family pseudouridine synthase -
  LBUC_RS03535 (Lbuc_0681) - 729880..730728 (+) 849 WP_013727502.1 methyltransferase domain-containing protein -
  LBUC_RS03540 (Lbuc_0682) - 730746..731258 (+) 513 WP_013727503.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69687.82 Da        Isoelectric Point: 4.9685

>NTDB_id=40493 LBUC_RS03510 WP_013727497.1 724723..726534(+) (pepF) [Lentilactobacillus buchneri NRRL B-30929]
MPKPQELPLRKDVPEELTWDLTTIYPTDQEFETDYEAVQTGAKQFAELAGTIEKSAAALLTATERLMTLSRKLEKVYVYA
QLKNDQDTSEDKYQAMYSRAESLGAQFGAATAWFEPELLKVSDDQIKQFYQDQPKLADYRRFFDQTFKRRNHILSNDVEA
VLAGAGDIFSSGEKTFGILDNTDLSFPAVTDENGNQVKLSQGVYGILLESTKQSVRKEAFEKLYQVYRQFQHTLAATLTT
NVKNHNFKANIRHYNNALEAALADNEVPTDVYNNLIKVVNEHLDLLHRYVALRKKILGLDELHMYDMYTSLVGKKSPKYT
FEQSKQIALEALQVMGPDYVSHVKEEFNNRWIDVVENQFKRSGGYSSGTYDTNPYILLNWKDNLDNLYTLIHETGHSMHS
YYSHHNQPYQYGDYSIFVAEIASTTNENILTDYLLNKFKDDDEMKKFILNYYLDGFKGTVFRQTQFAEFEQYIHEQDAKG
QPLTANFMDDYYRNLNQKYYGDAVISDPQIGLEWSRIPHFYYNFYVYQYSTGFAAASTLADGIVNGGQANVDKYLNYLKS
GSSDTPTNVMKKAGVDMTQPEYLEKAFQIFEQRLDEFERLYNK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=40493 LBUC_RS03510 WP_013727497.1 724723..726534(+) (pepF) [Lentilactobacillus buchneri NRRL B-30929]
ATGCCAAAACCACAAGAATTACCGCTTAGAAAAGATGTTCCAGAAGAACTGACTTGGGATCTGACGACGATTTATCCAAC
CGATCAGGAATTTGAAACTGACTATGAAGCTGTTCAAACCGGTGCCAAACAATTCGCTGAATTAGCCGGAACCATTGAGA
AGAGCGCGGCCGCGCTGCTGACGGCAACTGAGCGTTTGATGACCTTAAGCCGAAAGCTTGAAAAAGTCTATGTCTACGCC
CAGTTGAAAAATGACCAGGATACCAGCGAAGACAAGTATCAGGCCATGTATTCCCGTGCGGAATCCTTGGGGGCTCAGTT
TGGAGCGGCGACTGCCTGGTTTGAACCGGAACTCCTCAAAGTTTCTGACGATCAAATCAAGCAGTTTTATCAGGATCAAC
CCAAACTGGCCGATTATCGACGGTTTTTCGATCAAACCTTTAAACGCCGTAATCATATTTTAAGCAATGATGTTGAAGCC
GTCCTGGCGGGGGCCGGCGATATTTTCTCGTCTGGAGAGAAAACCTTTGGCATTTTGGATAACACTGATCTTTCATTCCC
AGCAGTGACTGATGAGAATGGCAATCAGGTGAAGTTATCTCAAGGTGTTTATGGTATTTTATTGGAATCGACAAAGCAAA
GTGTGCGTAAAGAAGCGTTTGAAAAATTGTATCAAGTTTATCGTCAGTTCCAGCACACGCTGGCGGCAACACTGACCACT
AATGTCAAGAATCACAATTTCAAAGCCAACATCCGCCACTATAACAATGCTTTGGAGGCCGCTTTGGCTGATAACGAGGT
GCCGACAGACGTTTATAATAACCTGATCAAAGTGGTCAACGAGCACCTCGACCTGCTGCACAGGTACGTTGCTTTGCGTA
AAAAGATTCTGGGCCTTGATGAACTGCATATGTACGATATGTATACGTCCCTAGTTGGTAAAAAATCACCCAAGTATACG
TTTGAACAGTCCAAGCAAATCGCTTTGGAAGCTTTGCAGGTAATGGGGCCGGATTATGTCAGCCACGTTAAAGAGGAGTT
CAACAACCGTTGGATTGACGTTGTTGAAAATCAATTCAAAAGAAGCGGCGGCTATTCCTCAGGGACTTACGATACCAATC
CGTATATTTTACTGAATTGGAAGGATAATTTGGATAATCTCTACACGTTGATCCACGAAACCGGTCATAGTATGCACAGC
TACTATTCCCATCATAACCAGCCTTATCAGTATGGTGATTACTCCATTTTTGTCGCTGAAATTGCGTCCACGACCAACGA
GAACATCTTGACGGATTATCTCTTGAATAAATTTAAAGATGATGATGAAATGAAGAAATTTATTTTAAATTACTATCTGG
ATGGATTTAAGGGAACGGTTTTCCGCCAAACTCAGTTTGCTGAATTTGAACAATACATTCATGAACAGGATGCAAAAGGT
CAACCATTAACCGCCAACTTTATGGATGATTACTATCGCAATTTAAATCAAAAATACTATGGTGATGCCGTGATTTCTGA
CCCTCAGATTGGCCTTGAATGGTCACGGATTCCACATTTCTATTACAACTTCTACGTTTATCAATATTCCACCGGCTTTG
CTGCCGCATCGACATTGGCTGATGGCATTGTGAACGGCGGCCAGGCCAACGTTGATAAATATTTGAACTACCTCAAATCA
GGCAGTTCGGACACGCCAACCAACGTCATGAAAAAAGCCGGCGTTGACATGACGCAACCGGAATATCTTGAGAAGGCCTT
CCAGATTTTTGAGCAGCGTCTGGATGAATTTGAGCGTTTGTACAACAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.03

98.507

0.522

Multiple sequence alignment