Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   GOM48_RS01975 Genome accession   NZ_CP046523
Coordinates   404565..404858 (+) Length   97 a.a.
NCBI ID   WP_049504738.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399565..409858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01945 (GOM48_01940) - 400010..401056 (+) 1047 WP_235098028.1 hypothetical protein -
  GOM48_RS01950 (GOM48_01945) - 401034..402248 (+) 1215 WP_235098029.1 ATP-binding protein -
  GOM48_RS01955 (GOM48_01950) - 402442..403221 (+) 780 WP_007517765.1 hypothetical protein -
  GOM48_RS01960 (GOM48_01955) - 403303..403704 (+) 402 WP_235098032.1 YbgA family protein -
  GOM48_RS01965 (GOM48_01960) - 403688..404053 (+) 366 WP_235098034.1 TIGR02328 family protein -
  GOM48_RS01970 (GOM48_01965) - 404210..404575 (+) 366 WP_235098036.1 type II toxin-antitoxin system RelE/ParE family toxin -
  GOM48_RS01975 (GOM48_01970) HI0659 404565..404858 (+) 294 WP_049504738.1 helix-turn-helix domain-containing protein Machinery gene
  GOM48_RS01980 (GOM48_01975) metE 405212..407461 (+) 2250 WP_235098038.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  GOM48_RS01985 (GOM48_01980) metF 407556..408422 (+) 867 WP_235098040.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10722.39 Da        Isoelectric Point: 5.1991

>NTDB_id=404908 GOM48_RS01975 WP_049504738.1 404565..404858(+) (HI0659) [Streptococcus oralis strain SOD]
MKNSAIGSNWKDIRSELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKG

Nucleotide


Download         Length: 294 bp        

>NTDB_id=404908 GOM48_RS01975 WP_049504738.1 404565..404858(+) (HI0659) [Streptococcus oralis strain SOD]
ATGAAGAATAGTGCTATTGGAAGTAATTGGAAAGATATCAGGTCTGAACTCTTTACCAAGGAGGAAATCCTTGAAAGTGA
TATGCGAGTGGCTATCATGAGCGAGCTGATTGAGGCTAGGCATGAGCAAGGTATCAGTCAGAAAAAACTAGAAGAACTCA
GTGGAGTGAGCCAGCCTGTTATAGCTAGAATGGAAACAGGAAAGACTAGTCCTCAGTTGGATACGGTCTTAAAAGTCTTA
GCCAGTTTGGGCAAGACACTGGCAGTTGTCCCCCTAGAACAGGAAAAAGGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557

Multiple sequence alignment