Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM48_RS01205 Genome accession   NZ_CP046523
Coordinates   234427..236187 (+) Length   586 a.a.
NCBI ID   WP_235097847.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 229427..241187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01185 (GOM48_01170) - 230560..231276 (+) 717 WP_000532892.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM48_RS01190 (GOM48_01175) - 231326..232030 (-) 705 WP_235097842.1 CD20-like domain-containing protein -
  GOM48_RS01195 (GOM48_01180) - 232223..232684 (+) 462 WP_235098703.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM48_RS01200 (GOM48_01185) rcrP 232668..234437 (+) 1770 WP_235097844.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS01205 (GOM48_01190) rcrQ 234427..236187 (+) 1761 WP_235097847.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS01210 (GOM48_01195) - 236285..236788 (+) 504 WP_235097849.1 phosphatase PAP2 family protein -
  GOM48_RS01215 (GOM48_01200) - 236902..237348 (+) 447 WP_000776591.1 LytTR family DNA-binding domain-containing protein -
  GOM48_RS01220 (GOM48_01205) - 237354..238028 (+) 675 WP_235097851.1 LiaF transmembrane domain-containing protein -
  GOM48_RS01225 (GOM48_01210) rpmB 238134..238322 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  GOM48_RS01230 (GOM48_01215) - 238475..238840 (+) 366 WP_000216441.1 Asp23/Gls24 family envelope stress response protein -
  GOM48_RS01235 (GOM48_01220) - 238843..240510 (+) 1668 WP_235097853.1 DAK2 domain-containing protein -
  GOM48_RS01240 (GOM48_01225) - 240634..240840 (+) 207 WP_000390701.1 hypothetical protein -
  GOM48_RS01245 (GOM48_01230) - 240837..241031 (+) 195 WP_000709174.1 hypothetical protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64658.33 Da        Isoelectric Point: 4.8963

>NTDB_id=404901 GOM48_RS01205 WP_235097847.1 234427..236187(+) (rcrQ) [Streptococcus oralis strain SOD]
MENKKVSVWKQCKPYMAGLQLPLLIAVVAAVISSIITVYGPTKIKEITNLISDGLMTGIDLEAVSSIASFLVILYVFGAI
LNYTQAYIFSTSIQHFSKRLRTAIAEKINRLPLGYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSASFLLIAVLVTM
FGMNWILALVTVVSTLVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVDTSKARFADLNQDLHDS
IWKSQFISGIMMPAMFFVGNFSYVLVIIVGAALALEGHITIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVLE
FLAEAEMQDESHKERQLSNMKGEVVFDHVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
ICIDGVDTKDMKRSEVHDAFSMVLQDTWLFEGTIRENLIYNQTDISDERMMEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEDRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDDLMAQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=404901 GOM48_RS01205 WP_235097847.1 234427..236187(+) (rcrQ) [Streptococcus oralis strain SOD]
ATGGAAAATAAAAAAGTTTCGGTCTGGAAACAGTGCAAACCTTATATGGCAGGCCTCCAACTCCCTCTCCTAATAGCAGT
TGTGGCAGCGGTCATTTCAAGCATCATTACCGTTTATGGTCCAACTAAGATTAAAGAAATTACAAACTTGATTTCAGATG
GTTTGATGACTGGAATTGATTTAGAGGCTGTTTCAAGTATTGCTAGCTTTTTAGTGATTCTCTATGTATTTGGCGCCATC
CTTAACTATACACAGGCCTATATCTTTTCAACGAGTATCCAACATTTTTCAAAACGCTTGCGGACAGCAATCGCTGAAAA
AATCAATCGTTTGCCACTTGGCTATTTTGACCGTCATTCACAAGGAGATACCCTTTCGCGCGTGACCAATGATGTGGATA
CGGCAGCGCAATCTCTCAACCAAAGTCTAGGGACAGTTCTTTCAGCTAGTTTCTTGTTGATTGCTGTCTTGGTGACCATG
TTTGGGATGAACTGGATTTTGGCATTGGTAACCGTTGTATCAACCCTTGTTGGTTTTGCGGCGGTTTCCGTAATCATGGC
CAAGTCACAGGGTTATTTTAAAGCCCAACAAAATAATCTAGCGGCCGTCAATGGTTATGTGGAAGAGATGTACTCTGGCC
ATAATGTAGTGACCAGCTACAACGCAGTGGACACCTCCAAAGCGAGATTTGCTGATTTAAACCAGGACTTGCATGATAGT
ATCTGGAAATCTCAGTTTATCTCTGGTATCATGATGCCAGCCATGTTCTTTGTTGGGAACTTTAGTTATGTCTTAGTCAT
CATCGTTGGGGCCGCGCTGGCGTTAGAAGGCCATATCACTATAGGGATTATTGTAGCCTTTATGGTTTACGTACGGACCT
TCTCTCAACCTCTGTCACAGATTGCCCAAGGGATTACGAGCTTGCAACAAGCGAGTGCAGCCATGACTCGTGTATTAGAA
TTTTTGGCTGAAGCAGAGATGCAAGATGAATCTCATAAGGAAAGACAATTGAGCAACATGAAAGGGGAAGTAGTCTTTGA
TCACGTGTCCTTTGGCTATACACCAGAGCGCACCATCATCCATGACTTTTCTGCGACAGCTCATGCAGGTCAAAAGGTCG
CAATCGTTGGACCGACTGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGATAGATAAGGGAAGT
ATCTGTATCGATGGTGTGGATACCAAGGATATGAAGCGCTCAGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGAACGATTCGAGAGAACCTGATCTATAATCAGACAGACATCAGTGATGAACGAATGATGGAAGCCA
GCAAGGCTGTGGGAATCCACCACTTTATCATGACCTTGCCAGATGGCTACGATACTGTTTTGGACGACACCGTGACCTTG
TCTGTCGGACAAAAACAGCTCTTGACCATTGCTCGTGCTTTGCTAAAAGATGCGCCACTCCTAATTCTGGATGAAGCGAC
ATCCTCAGTCGACACACGTACAGAGGAGTTGATTCAAAAAGCCATGGACCGTTTGATGGAAGATCGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACTATCCGTAATGCCGACTTGATTCTTGTCATGAAAGATGGCAATATCATTGAGCAAGGGAAC
CATGATGACCTTATGGCCCAAGCTGGCTTCTATGCCGACTTGTACAATAGCCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.781

99.659

0.666

Multiple sequence alignment