Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GOM48_RS01200 Genome accession   NZ_CP046523
Coordinates   232668..234437 (+) Length   589 a.a.
NCBI ID   WP_235097844.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 227668..239437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01175 (GOM48_01160) - 228429..228983 (-) 555 WP_125449796.1 GNAT family N-acetyltransferase -
  GOM48_RS01180 (GOM48_01165) - 229093..230460 (+) 1368 WP_235097840.1 MATE family efflux transporter -
  GOM48_RS01185 (GOM48_01170) - 230560..231276 (+) 717 WP_000532892.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM48_RS01190 (GOM48_01175) - 231326..232030 (-) 705 WP_235097842.1 CD20-like domain-containing protein -
  GOM48_RS01195 (GOM48_01180) - 232223..232684 (+) 462 WP_235098703.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM48_RS01200 (GOM48_01185) rcrP 232668..234437 (+) 1770 WP_235097844.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS01205 (GOM48_01190) rcrQ 234427..236187 (+) 1761 WP_235097847.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS01210 (GOM48_01195) - 236285..236788 (+) 504 WP_235097849.1 phosphatase PAP2 family protein -
  GOM48_RS01215 (GOM48_01200) - 236902..237348 (+) 447 WP_000776591.1 LytTR family DNA-binding domain-containing protein -
  GOM48_RS01220 (GOM48_01205) - 237354..238028 (+) 675 WP_235097851.1 LiaF transmembrane domain-containing protein -
  GOM48_RS01225 (GOM48_01210) rpmB 238134..238322 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  GOM48_RS01230 (GOM48_01215) - 238475..238840 (+) 366 WP_000216441.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65302.66 Da        Isoelectric Point: 5.8086

>NTDB_id=404900 GOM48_RS01200 WP_235097844.1 232668..234437(+) (rcrP) [Streptococcus oralis strain SOD]
MKKLAKRITGKEWGMILLTVLFTCFSVYLELEVPTYISEITELLGTPGTELGDLWSPAIKMIGLSLLAFLSSVTVGFFAA
RVAASYTTHLRSDIFNRVLDYSQTEIKRFSIPSLLTRTTNDITQVQMLFTMGLQVVTRGPIMAIWAIGKILGKSEYWLWA
VVIAVIVNVLMTTVLLTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDEKFEAANDEVTRLNLFVNRLMAI
MNPIMMGISSGLSLAIYWIGAYIINDASLTERLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTLVSAGRINQVLDLH
SSIENPSHAKTADPSVQGQVEFRDVTFRYSKNSEAVVEHVTFKAEAGQTVAFIGSTGSGKSTLVNLLPRFYDVSDGEILV
DGVNVQDYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGKSKETPLSEAAMWQALELAQSKAFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQELAEKTKSMTKLIVAQRISTIMDADLILVLNQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=404900 GOM48_RS01200 WP_235097844.1 232668..234437(+) (rcrP) [Streptococcus oralis strain SOD]
ATGAAGAAACTCGCTAAACGTATCACAGGAAAAGAGTGGGGAATGATTCTCTTGACTGTCCTCTTTACCTGTTTCTCGGT
CTATCTAGAGTTAGAAGTACCGACTTACATTTCAGAAATTACAGAACTACTTGGAACTCCAGGTACGGAGCTAGGAGATC
TTTGGTCACCAGCCATTAAGATGATAGGCTTGTCTCTACTTGCCTTTCTCTCATCCGTTACTGTTGGATTTTTTGCCGCT
CGCGTCGCAGCGTCTTACACAACTCATTTACGAAGCGATATTTTTAATCGTGTATTGGATTATTCTCAGACAGAAATTAA
ACGTTTCTCTATTCCTAGTCTTTTGACTCGGACAACCAATGATATTACCCAAGTACAGATGCTCTTTACCATGGGCTTGC
AAGTAGTTACTCGTGGGCCAATTATGGCTATCTGGGCCATTGGAAAAATCCTTGGGAAATCGGAATACTGGCTCTGGGCA
GTAGTAATCGCTGTTATCGTCAATGTTTTGATGACAACTGTTCTCCTGACTCTGGCCTTTCCAAAACAATCGGTCATCCA
AAAATTGACAGATAAACTCAATAGCATCACTCGTGAAAGTTTGACTGGGATTCGAGTTGTTCGCGCATACAATGCGGAAG
ATTACCAAGATGAAAAATTTGAAGCAGCCAATGATGAAGTGACGCGCCTCAATCTCTTTGTCAATCGATTGATGGCGATT
ATGAACCCGATTATGATGGGGATTTCAAGTGGATTGAGTTTAGCCATTTACTGGATTGGTGCCTATATCATCAACGACGC
AAGTTTGACAGAACGTCTGCCGCTCTTTAGTGATATGGTAGTCTTCATGTCCTATGCTATGCAGGTCGTGATGGGATTCC
TTCTCATGGGAGCACTCTTTATCGTTCTTCCTCGTACCTTGGTTTCGGCAGGACGTATCAATCAAGTCTTGGATCTGCAT
TCTTCTATTGAAAATCCTAGTCATGCAAAGACAGCGGATCCTTCCGTTCAAGGACAAGTGGAATTTCGTGATGTAACTTT
CCGCTACTCTAAAAACTCAGAAGCAGTCGTGGAACATGTCACTTTCAAAGCGGAAGCGGGTCAAACCGTGGCTTTCATCG
GATCGACTGGATCTGGTAAATCTACGCTTGTCAATCTCTTGCCACGTTTTTACGATGTTTCAGACGGAGAAATCCTAGTG
GACGGAGTTAATGTTCAAGATTACGATTTGGAAGATTTGCGCAATAAGGTCGGCTATATTCCTCAAAAAGCAGTCCTCTT
TTCTGGAGATGTCAAGGGGAACTTGGACTTTGGTAAGAGCAAAGAAACTCCTCTAAGCGAGGCTGCTATGTGGCAAGCTC
TTGAATTGGCCCAGTCTAAAGCATTTATCGAGGACAAGGAAGCAGGTCTTGCATCAGAAGTGGCTCAAGGCGGAACCAAC
TTCTCAGGAGGTCAAAGACAGCGTTTGGCCATTGCACGCGCCTTGGCTCGTAAACCAGAGATTCTCATCTTTGATGATTC
CTTCTCAGCCTTGGACTACAAGACAGATCGTATCCTGCGCCAAGAGTTAGCTGAGAAAACAAAATCCATGACCAAGCTCA
TCGTAGCGCAGCGCATTTCTACCATTATGGATGCAGACTTGATCTTAGTATTGAATCAAGGAAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTAGCTACCAACGAAGTCTACCAAGAAATTGCCTACTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(19-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.89

100

0.672

Multiple sequence alignment