Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GOM48_RS00140 Genome accession   NZ_CP046523
Coordinates   25596..26957 (+) Length   453 a.a.
NCBI ID   WP_081102559.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20596..31957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS00105 comW 20918..21151 (+) 234 WP_000939517.1 sigma(X)-activator ComW -
  GOM48_RS00110 (GOM48_00105) - 21389..22675 (+) 1287 WP_223328858.1 adenylosuccinate synthase -
  GOM48_RS00115 (GOM48_00110) - 23158..23703 (-) 546 WP_235097610.1 hypothetical protein -
  GOM48_RS00120 (GOM48_00115) tadA 23969..24436 (+) 468 WP_001110101.1 tRNA adenosine(34) deaminase TadA -
  GOM48_RS00130 (GOM48_00125) - 24622..25065 (+) 444 WP_000701979.1 dUTP diphosphatase -
  GOM48_RS00135 (GOM48_00130) - 25067..25582 (+) 516 WP_235097612.1 histidine phosphatase family protein -
  GOM48_RS00140 (GOM48_00135) radA 25596..26957 (+) 1362 WP_081102559.1 DNA repair protein RadA Machinery gene
  GOM48_RS00145 (GOM48_00140) - 27030..27524 (+) 495 WP_025170864.1 beta-class carbonic anhydrase -
  GOM48_RS00150 (GOM48_00145) - 27738..28706 (+) 969 WP_084933666.1 ribose-phosphate diphosphokinase -
  GOM48_RS00155 (GOM48_00150) - 28826..29263 (+) 438 WP_000076478.1 CoA-binding protein -
  GOM48_RS00160 (GOM48_00155) - 29290..30300 (-) 1011 WP_235097615.1 YeiH family protein -
  GOM48_RS00165 (GOM48_00160) - 30452..31621 (+) 1170 WP_235097617.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49433.89 Da        Isoelectric Point: 6.1894

>NTDB_id=404884 GOM48_RS00140 WP_081102559.1 25596..26957(+) (radA) [Streptococcus oralis strain SOD]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=404884 GOM48_RS00140 WP_081102559.1 25596..26957(+) (radA) [Streptococcus oralis strain SOD]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTACAATTCCCCAAAATATCTAGGGCGTTGTCCTAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGGGGAGTGGTACCAGGGAGTCTCGTCCTTATCGGTGGGGATCCAGGGATTGGGAAATCAACCCTTCTCTTACA
AGTATCAACCCAGTTGTCTCAAGTGGGTACGGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAGTTACGAG
CAGAGCGCTTGGGGGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTGGAG
CGCATCCAACCAGATTTTCTCATCATCGACTCTATCCAGACGATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
GTCTCAGGTGCGTGAGGTAACGGCTGAACTCATGCAGTTGGCGAAGACTAATAACATTGCTATCTTTATCGTAGGACATG
TGACTAAGGAAGGAACCTTGGCAGGTCCGCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGC
CACCATACCTTCCGTATTTTGAGGGCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGTGGATTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCTACTGGCTCGTCAATCG
TTGTGACCATGGAAGGGACCCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCTAAG
CGTACGACGACTGGACTTGATTTCAATCGTGCAAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTTTTGCA
AAATCAGGATGCTTATCTCAAATCTGCTGGTGGCGTCAAATTGGATGAGCCTGCCATTGACTTAGCCGTTGCAGTGGCTA
TTGCCTCTAGTTACAAGGACAAGCCTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATTCGG
CGCGTGAATCGCATCGAACAACGCATAAATGAAGCGGCAAAACTGGGCTTTACCAAGATTTATGTACCCAAGAATTCCTT
GACAGGAATCACTCCACCCAAGGAAATTGAAGTCATTGGTGTGACAACGATTCAAGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.558

100

0.996
  radA Streptococcus mitis SK321

99.338

100

0.993
  radA Streptococcus pneumoniae Rx1

99.338

100

0.993
  radA Streptococcus pneumoniae D39

99.338

100

0.993
  radA Streptococcus pneumoniae R6

99.338

100

0.993
  radA Streptococcus pneumoniae TIGR4

99.338

100

0.993
  radA Bacillus subtilis subsp. subtilis str. 168

63.576

100

0.636

Multiple sequence alignment