Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   GE024_RS11345 Genome accession   NZ_CP046521
Coordinates   57174..57269 (+) Length   31 a.a.
NCBI ID   WP_205407142.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 52174..62269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS00355 (GE024_00355) purE 52669..53160 (+) 492 WP_093999210.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GE024_RS00360 (GE024_00360) purK 53147..54217 (+) 1071 WP_093999211.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GE024_RS00365 (GE024_00365) purB 54744..56036 (+) 1293 WP_093999212.1 adenylosuccinate lyase -
  GE024_RS00370 (GE024_00370) comR 56174..57085 (+) 912 WP_093999213.1 transcriptional regulator Rgg4/ComR Regulator
  GE024_RS11345 comS 57174..57269 (+) 96 WP_205407142.1 quorum-sensing system DWW-type pheromone Regulator
  GE024_RS00375 (GE024_00375) ruvB 57312..58310 (+) 999 WP_093999214.1 Holliday junction branch migration DNA helicase RuvB -
  GE024_RS00380 (GE024_00380) - 58451..58894 (+) 444 WP_093999215.1 low molecular weight protein-tyrosine-phosphatase -
  GE024_RS00385 (GE024_00385) - 58911..59312 (+) 402 WP_093999216.1 MORN repeat-containing protein -
  GE024_RS00390 (GE024_00390) - 59309..61084 (+) 1776 WP_093999217.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3912.71 Da        Isoelectric Point: 9.6624

>NTDB_id=404882 GE024_RS11345 WP_205407142.1 57174..57269(+) (comS) [Streptococcus canis strain HL_100]
MFKKYHYYFILVAMLTFKAAQIISEVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=404882 GE024_RS11345 WP_205407142.1 57174..57269(+) (comS) [Streptococcus canis strain HL_100]
ATGTTCAAAAAATATCACTACTATTTTATTCTTGTAGCTATGTTAACTTTTAAAGCAGCCCAGATAATTAGTGAAGTTGA
CTGGTGGCGTTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

64.516

100

0.645
  comS Streptococcus pyogenes MGAS315

41.935

100

0.419

Multiple sequence alignment