Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GE024_RS09745 Genome accession   NZ_CP046521
Coordinates   1969835..1971196 (-) Length   453 a.a.
NCBI ID   WP_093999360.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1964835..1976196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS09720 (GE024_09760) - 1966418..1966918 (-) 501 WP_307761776.1 MFS transporter -
  GE024_RS09725 (GE024_09765) - 1966899..1967576 (-) 678 WP_093999362.1 hypothetical protein -
  GE024_RS09730 (GE024_09770) - 1967580..1968026 (-) 447 WP_003045497.1 LytTR family DNA-binding domain-containing protein -
  GE024_RS09735 (GE024_09775) - 1968280..1968996 (-) 717 WP_093999361.1 TIGR00266 family protein -
  GE024_RS09740 (GE024_09780) - 1969150..1969644 (-) 495 WP_003045500.1 carbonic anhydrase -
  GE024_RS09745 (GE024_09785) radA 1969835..1971196 (-) 1362 WP_093999360.1 DNA repair protein RadA Machinery gene
  GE024_RS09750 (GE024_09790) - 1971294..1971740 (-) 447 WP_093999365.1 dUTP diphosphatase -
  GE024_RS09755 (GE024_09795) - 1971846..1972613 (-) 768 WP_003045505.1 epoxyqueuosine reductase QueH -
  GE024_RS09760 (GE024_09800) - 1972730..1974514 (-) 1785 WP_093999359.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49324.73 Da        Isoelectric Point: 6.5131

>NTDB_id=404876 GE024_RS09745 WP_093999360.1 1969835..1971196(-) (radA) [Streptococcus canis strain HL_100]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYYRTQTDMAEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQAIRSEVE
NLQPDFLIIDSIQTIMSPEITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPSIFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEATKLGFTKIYAPKNALQGIAIPKGIAVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=404876 GE024_RS09745 WP_093999360.1 1969835..1971196(-) (radA) [Streptococcus canis strain HL_100]
ATAGCAAAGAAAAAAGCGACCTTCATTTGTCAAGAGTGTGGCTACCAGTCACCCAAATATTTAGGGCGCTGTCCAAACTG
TTCAGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCTCGTGTTAGTTTGACAGGTGAGAAGA
GTAAACCTGTTAAACTAAAAGATGTGGATAATATCAGCTATTATCGGACACAGACCGATATGGCAGAATTTAACCGTGTT
CTCGGTGGTGGTGTCGTTCCAGGAAGTTTGGTCTTAATCGGTGGCGATCCAGGTATTGGAAAATCCACCTTGCTCTTGCA
GGTATCCACCCAGCTAGCCAATAAGGGAACCGTTCTCTATGTCTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGCA
GTGAGCGTTTGGGGGAGATTGACAATGAATTTTACCTCTATGCTGAGACTAACATGCAGGCTATTCGATCAGAAGTTGAA
AACTTGCAGCCAGACTTCTTGATTATTGATTCTATTCAAACCATTATGAGCCCTGAGATTACAGGTGTTCAAGGATCAGT
TAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACCAATAATATTGCAACCTTTATTGTGGGGCATG
TCACCAAGGAAGGGACTTTGGCAGGACCTCGTATGTTAGAACACATGGTGGACACCGTTCTCTACTTTGAGGGGGAAAGG
CATCATACTTTTCGTATTTTGCGGGCTGTGAAAAATCGCTTTGGCTCTACGAATGAGATTGGTATTTTTGAAATGCAGTC
AGCCGGACTTGTTGAGGTTCTAAATCCAAGTCAAGTCTTTCTTGAAGAGCGTTTAGATGGTGCCACAGGTTCAGCCATCG
TGGTAACCATGGAAGGCAGCCGACCGATTTTAGCGGAGGTTCAATCTTTGGTAACACCATCTATTTTTGGCAATGCTAGA
CGAACCACAACTGGACTTGATTTCAATCGTGTAAGCCTCATTATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTTTTGCA
AAATCAAGATGCTTACCTCAAATCAGCTGGTGGTGTCAAATTGGATGAGCCTGCTATTGATTTGGCAGTCGCTGTGGCCA
TTGCTTCTAGTTACAAGGAAAAACCAACTAGCCCGCAAGAAGCTTTCTTAGGCGAGATTGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAACTAAGCTAGGCTTTACTAAAATCTACGCCCCTAAAAATGCTCT
GCAAGGGATTGCTATTCCAAAAGGAATTGCTGTGGTTGGGGTGACTACCGTTGGCCAAGTGTTAAAAGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

86.726

99.779

0.865
  radA Streptococcus pneumoniae D39

86.726

99.779

0.865
  radA Streptococcus pneumoniae R6

86.726

99.779

0.865
  radA Streptococcus pneumoniae TIGR4

86.726

99.779

0.865
  radA Streptococcus mitis NCTC 12261

86.726

99.779

0.865
  radA Streptococcus mitis SK321

86.504

99.779

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

61.05

100

0.616

Multiple sequence alignment