Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GE024_RS07300 Genome accession   NZ_CP046521
Coordinates   1439701..1441503 (-) Length   600 a.a.
NCBI ID   WP_093998763.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434701..1446503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS07270 (GE024_07285) - 1435479..1436186 (-) 708 WP_003044150.1 O-methyltransferase -
  GE024_RS07275 (GE024_07290) - 1436241..1437449 (-) 1209 WP_093998761.1 OFA family MFS transporter -
  GE024_RS07280 (GE024_07295) - 1437556..1437630 (-) 75 Protein_1388 HAD family phosphatase -
  GE024_RS07285 (GE024_07300) - 1437648..1438307 (-) 660 WP_003044158.1 HAD-IA family hydrolase -
  GE024_RS07290 (GE024_07305) - 1438307..1438849 (-) 543 WP_093998762.1 GNAT family N-acetyltransferase -
  GE024_RS07295 (GE024_07310) - 1439072..1439512 (-) 441 WP_232038583.1 NADPH-dependent FMN reductase -
  GE024_RS07300 (GE024_07315) pepF 1439701..1441503 (-) 1803 WP_093998763.1 oligoendopeptidase F Regulator
  GE024_RS07305 (GE024_07320) - 1441516..1442478 (-) 963 WP_003044168.1 competence protein CoiA -
  GE024_RS07310 (GE024_07325) - 1442595..1443758 (-) 1164 WP_093998764.1 MFS transporter -
  GE024_RS07315 (GE024_07330) - 1443849..1444565 (-) 717 WP_093998765.1 pseudouridine synthase -
  GE024_RS07320 (GE024_07335) nagB 1444683..1445387 (-) 705 WP_003044177.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69318.26 Da        Isoelectric Point: 4.7152

>NTDB_id=404862 GE024_RS07300 WP_093998763.1 1439701..1441503(-) (pepF) [Streptococcus canis strain HL_100]
MTDNRSHLEEKYTWDLSTIFATDEMWEAEVSQLTTDVEASKEFAGHLLDSSANLLKITKTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMTLSQEDYQTFLTETPELKGYNHFFDKLFQAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPTVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYNSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYADLNEKYYGLSKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLAYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLIELEALVAKGVHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=404862 GE024_RS07300 WP_093998763.1 1439701..1441503(-) (pepF) [Streptococcus canis strain HL_100]
ATGACTGATAATCGTAGCCACTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACTGATGAGATGTGGGA
AGCAGAGGTGAGCCAATTAACTACTGATGTTGAGGCTTCTAAAGAGTTTGCTGGTCATTTGCTGGATTCTAGTGCTAATT
TGTTAAAGATTACAAAGACGTATTTAGAATTGGCTCGTCGTGTGGAGAAAGTTTATGTTTATGCTCACATGAAAAATGAT
CAAGACACTACCGTTGCCAAGTATCAAGAATACCAAGCTAAGGCTTCAGGTTTGTATGCCAAATTTAGTGAGGTCTTTTC
ATTCTATGATCCAGAAGTAATGACGCTTAGTCAAGAGGATTACCAAACTTTCCTTACGGAAACCCCTGAGTTGAAAGGGT
ATAATCATTTCTTTGACAAATTATTCCAAGCACGCGAACATGTTCTCAGTCAAGCGGAAGAGGAATTATTAGCAGGGGCT
CAAGAAATTTTTAATGGTGCGGAAGAAACCTTTAGTATTCTTGATAATGCGGACATTGTTTTTCCGACGGTCAAAAATGA
TAAAGGAGAAGATGTTGAATTAACCCATGGTAATTTCATTAGCTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTATGAGGCAATGTATAGTACTTATGAACAGTTCCAGCATACTTATGCAAAAACCTTACAGACAAATGTGAAGGTTCAA
AACTACAAGGCGCGTGTTCATAAATATAATTCAGCCCGTCAGGCTGCCATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
TGATACCTTGTTAGAAACGGTTAATAAACATTTGCCGCTGTTACATCGTTATTTGAAATTGCGTCAAGAGGTTCTTGGTT
TAGATGAATTGAAGATGTATGATGTTTACACACCGCTATCTGAAACAGATTTGGCTATTGGTTATGATGAGGCTTTGGAA
AAGGCAGAGAAGGTTTTGGCCGTTTTTGGTAAAGATTATGCAGACCGTGTGCACCGCGCTTTTACTGAACGCTGGATTGA
TGTTCATGTCAATAAAGGAAAACGTTCTGGAGCTTACTCAGGAGGTTCTTATGACACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTGGATAATCTCTACACATTAGTTCATGAGACTGGTCACAGTTTGCATTCTACTTTTACGCGTGAAACA
CAGCCTTATGTGTATGGGGATTACAGTATTTTCTTGGCAGAAATTGCCTCAACGACGAATGAAAATATTATGACAGAAGC
TCTCTTAAACGAAGTTCAAGATGAGAAAGAACGTTTTGCGATTTTAAACCATTACCTTGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACATGCTATTCACCAAGCTGATCAAAAAGGAGAAGTGTTAACAAGCGAATAC
CTTAACCAATTATACGCCGATTTAAATGAAAAATATTATGGTTTAAGTAAAGAGGATAATCATTTTATTCAGTATGAGTG
GGCACGTATTCCTCACTTCTATTACAATTATTATGTTTACCAATATGCAACAGGTTTTGCAGCCGCAAGCTATTTAGCAG
ATAAGATTGTTCACGGAACACAAGATGATATTGATCATTACTTGGCCTATCTCAAGTCAGGAAATTCTGATTACCCACTT
GAAGTGATTGCTAAAGCAGGCGTTGATATGGCAAAAGGGGACTATTTGGAAGCTGCCTTTAAGGTCTTTGAAGAACGCTT
AATAGAACTCGAAGCCCTTGTTGCAAAGGGGGTTCACCGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717

Multiple sequence alignment