Detailed information NTG0404824

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: HW113_RS06110
• Genome accession: NZ_CP058312
• Coordinates: 1202167..1202853 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692870.1
• Uniprot ID: Q8NW77
• Organism: Staphylococcus aureus strain BLR-DV
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1197167..1207853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW113_RS06090 (HW113_06090)	-	1197941..1198333 (+)	393	WP_000393259.1	GNAT family N-acetyltransferase	-
HW113_RS06095 (HW113_06095)	aph(2'')-Ia	1198334..1199773 (+)	1440	WP_001028144.1	aminoglycoside O-phosphotransferase APH(2'')-Ia	-
HW113_RS06100 (HW113_06100)	-	1199903..1201075 (-)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
HW113_RS06105 (HW113_06105)	-	1201463..1202170 (+)	708	WP_000261115.1	A24 family peptidase	-
HW113_RS06110 (HW113_06110)	ysxA/radC	1202167..1202853 (+)	687	WP_000692870.1	DNA repair protein RadC	Machinery gene
HW113_RS06115 (HW113_06115)	-	1202921..1203205 (+)	285	WP_000171859.1	hypothetical protein	-
HW113_RS06120 (HW113_06120)	-	1203322..1203519 (-)	198	WP_000025835.1	hypothetical protein	-
HW113_RS06125 (HW113_06125)	-	1203679..1204152 (+)	474	WP_001236735.1	DUF4930 family protein	-
HW113_RS06130 (HW113_06130)	-	1204226..1204345 (+)	120	WP_000840602.1	hypothetical protein	-
HW113_RS06135 (HW113_06135)	mreC	1204545..1205387 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
HW113_RS06140 (HW113_06140)	mreD	1205387..1205917 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
HW113_RS06145 (HW113_06145)	rplU	1206084..1206392 (+)	309	WP_000457385.1	50S ribosomal protein L21	-
HW113_RS06150 (HW113_06150)	-	1206398..1206718 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HW113_RS06155 (HW113_06155)	rpmA	1206730..1207014 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.28 Da
• Isoelectric Point: 7.0539

>NTDB_id=404824 HW113_RS06110 WP_000692870.1 1202167..1202853(+) (ysxA/radC) [Staphylococcus aureus strain BLR-DV]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=404824 HW113_RS06110 WP_000692870.1 1202167..1202853(+) (ysxA/radC) [Staphylococcus aureus strain BLR-DV]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

3D structure

• AlphaFold DB: Q8NW77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377