Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GNX71_RS28900 Genome accession   NZ_CP046508
Coordinates   6222168..6222566 (-) Length   132 a.a.
NCBI ID   WP_013543588.1    Uniprot ID   A0A0D0KYU0
Organism   Variovorax sp. RKNM96     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6217168..6227566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX71_RS28885 (GNX71_28825) - 6218898..6221207 (-) 2310 WP_206175594.1 methyl-accepting chemotaxis protein -
  GNX71_RS28890 (GNX71_28830) - 6221250..6221783 (-) 534 WP_206175595.1 chemotaxis protein CheW -
  GNX71_RS28895 (GNX71_28835) - 6221803..6222168 (-) 366 WP_042581921.1 response regulator -
  GNX71_RS28900 (GNX71_28840) pilG 6222168..6222566 (-) 399 WP_013543588.1 response regulator Regulator
  GNX71_RS28905 (GNX71_28845) - 6222647..6222817 (-) 171 WP_007838397.1 rubredoxin -
  GNX71_RS28910 (GNX71_28850) - 6222929..6223891 (+) 963 WP_206175596.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GNX71_RS28915 (GNX71_28855) hemL 6223899..6225179 (+) 1281 WP_206175597.1 glutamate-1-semialdehyde 2,1-aminomutase -
  GNX71_RS28920 (GNX71_28860) - 6225183..6225671 (+) 489 WP_206175598.1 hypothetical protein -
  GNX71_RS28925 (GNX71_28865) purH 6225696..6227303 (-) 1608 WP_206175599.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  GNX71_RS28930 (GNX71_28870) - 6227319..6227555 (-) 237 WP_007838304.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14720.95 Da        Isoelectric Point: 7.9041

>NTDB_id=404776 GNX71_RS28900 WP_013543588.1 6222168..6222566(-) (pilG) [Variovorax sp. RKNM96]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
KVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=404776 GNX71_RS28900 WP_013543588.1 6222168..6222566(-) (pilG) [Variovorax sp. RKNM96]
ATGGGCCCGAATGGATCAGGTTACAAGGTGCTGGTCATCGATGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTGGCGGAAGACGGTTTCGATGCGCTCTCCAAGGTTAACGACCACAAGCCCCATC
TGATTTTCTGCGACATCCTCATGCCGCGTCTCGATGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCATTTTTCC
AAGGTTCCGGTCGTCATGCTGTCTTCGAAAGACGGTGTATTCGACAAGGCCCGCGGCCGCATGGTCGGGTCGCAAGACTA
CCTGACCAAGCCTTTCACCAAAGACCAACTGCTGCAGGCCGTGCAGCAGTTTGGCATCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0KYU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

60.87

87.121

0.53

Multiple sequence alignment