Detailed information NTG0404775

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GNX71_RS27385
• Genome accession: NZ_CP046508
• Coordinates: 5893246..5894502 (+)
• Length: 418 a.a.
• NCBI ID: WP_206175326.1
• Uniprot ID: -
• Organism: Variovorax sp. RKNM96
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5888246..5899502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNX71_RS27365 (GNX71_27310)	-	5888772..5889407 (-)	636	WP_206175322.1	LysE family transporter	-
GNX71_RS27370 (GNX71_27315)	-	5889488..5890399 (+)	912	WP_206175323.1	LysR family transcriptional regulator ArgP	-
GNX71_RS27375 (GNX71_27320)	-	5890407..5891750 (-)	1344	WP_206175324.1	pitrilysin family protein	-
GNX71_RS27380 (GNX71_27325)	-	5891765..5893216 (-)	1452	WP_206175325.1	pitrilysin family protein	-
GNX71_RS27385 (GNX71_27330)	pilA	5893246..5894502 (+)	1257	WP_206175326.1	signal recognition particle-docking protein FtsY	Machinery gene
GNX71_RS27390 (GNX71_27335)	-	5894725..5896551 (-)	1827	WP_206175327.1	hybrid sensor histidine kinase/response regulator	-
GNX71_RS27395 (GNX71_27340)	-	5896564..5897274 (-)	711	WP_206175328.1	response regulator transcription factor	-
GNX71_RS27400 (GNX71_27345)	-	5897450..5897914 (+)	465	WP_206175329.1	Mpo1-like protein	-
GNX71_RS27405 (GNX71_27350)	rpoH	5898013..5898954 (+)	942	WP_042582807.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 43389.28 Da
• Isoelectric Point: 5.8854

>NTDB_id=404775 GNX71_RS27385 WP_206175326.1 5893246..5894502(+) (pilA) [Variovorax sp. RKNM96]
MFSFFKKKPPAETPVAPAPTPPVAPPAAPVAEPAPARSVFSPSSWFGGKPAAEEPAPAPVEAPAVVVPAPSPAPVASPAL
IPAPVPAPAPVAAPAPVPVPPPAPASVPKPVAIEAAAAPERKGWFDKLKTGLRKTGTGIQAVFVNAQIDDALYEELESAL
LMADTGVKATEYLLDDLKVRVKRQMATDASQVKVLLAEAIADLLRPLEKPLVIGQYTPTVIMVAGVNGAGKTTSIGKLTK
HLATEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSNEGGDPSAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDE
LKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVKTFDETLGLTGLIVTKLDGTAKGGVLCAIARERPIPVYFIGVGEK
LEDLETFNAREFAQALLG

Nucleotide

• Length: 1257 bp

>NTDB_id=404775 GNX71_RS27385 WP_206175326.1 5893246..5894502(+) (pilA) [Variovorax sp. RKNM96]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAAACCCCGGTCGCGCCGGCGCCGACCCCACCCGTCGCCCCGCCCGC
CGCCCCCGTTGCCGAGCCCGCCCCCGCGCGCTCGGTGTTTTCGCCTTCGAGTTGGTTCGGCGGGAAGCCCGCAGCCGAAG
AGCCGGCGCCTGCACCGGTCGAGGCGCCTGCAGTGGTGGTCCCTGCGCCGAGCCCCGCCCCGGTTGCATCGCCGGCTCTG
ATCCCAGCGCCCGTGCCAGCACCTGCGCCGGTCGCAGCGCCTGCCCCAGTTCCGGTTCCGCCCCCTGCGCCCGCCTCTGT
CCCGAAACCCGTCGCCATCGAAGCGGCGGCAGCCCCCGAACGCAAGGGCTGGTTCGACAAGCTCAAGACGGGCCTGCGCA
AGACCGGCACCGGCATCCAGGCCGTGTTCGTCAACGCGCAGATCGACGACGCGCTGTACGAAGAGCTCGAATCCGCCCTG
CTGATGGCCGACACCGGCGTCAAGGCCACCGAATACCTGCTCGATGACCTGAAGGTCCGCGTCAAGCGCCAGATGGCCAC
CGACGCGTCGCAGGTCAAGGTGCTGCTGGCCGAAGCCATCGCCGACCTGCTGCGCCCGCTCGAGAAACCGCTGGTCATCG
GCCAGTACACGCCCACCGTGATCATGGTGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAG
CACCTGGCCACCGAAGGCGCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCGGGCGGCGGCGCGCGAGCAGCTGCTGGT
CTGGGCCGACCGCAACACGGTCGAGATCGTGAGCAACGAGGGCGGCGACCCCTCGGCCGTGAGCTTCGATGCGGTGAACG
CTGGCAAGGCGCGCGGCAAGGACGTGGTGCTGGTCGATACCGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGACGAG
CTCAAGAAGATCAAGCGCGTCGTCACCAAGGCCGACGCCACCGCGCCGCACGAGGTACTGCTGGTGATCGACGGCAACAC
CGGGCAGAACGCGCTCGCGCAGGTGAAGACCTTCGACGAGACGCTGGGCCTCACCGGCCTGATCGTGACCAAGCTGGACG
GCACGGCCAAGGGCGGCGTGCTGTGCGCCATTGCGCGGGAGCGGCCGATTCCGGTCTATTTCATCGGCGTGGGGGAGAAG
CTCGAAGACCTCGAGACCTTCAACGCGCGCGAGTTCGCGCAGGCATTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (136-199)

• SRP54-type protein, GTPase domain (SRP54) (218-418)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.357	100	0.493