Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HXS78_RS09085 Genome accession   NZ_CP058308
Coordinates   1902446..1903873 (-) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain AMSCJX04     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897446..1908873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS78_RS09055 (HXS78_09060) yeeZ 1897501..1898325 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  HXS78_RS09060 (HXS78_09065) yeeY 1898371..1899300 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HXS78_RS09065 (HXS78_09070) yoeI 1899515..1899577 (+) 63 WP_010723108.1 membrane protein YoeI -
  HXS78_RS09070 (HXS78_09075) plaP 1899567..1900925 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HXS78_RS09075 (HXS78_09080) tsuA 1901104..1902162 (+) 1059 WP_023910197.1 thiosulfate utilization transporter TsuA/YeeE -
  HXS78_RS09080 (HXS78_09085) tsuB 1902176..1902403 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HXS78_RS09085 (HXS78_09090) sbcB 1902446..1903873 (-) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  HXS78_RS09090 (HXS78_09095) dacD 1904082..1905248 (+) 1167 WP_001563931.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HXS78_RS09095 (HXS78_09100) sbmC 1905367..1905840 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  HXS78_RS09100 (HXS78_09105) yeeA 1906038..1907096 (+) 1059 WP_078267987.1 FUSC family protein -
  HXS78_RS09105 (HXS78_09110) tmaR 1907268..1907597 (+) 330 WP_000450409.1 DUF496 family protein -
  HXS78_RS09110 (HXS78_09115) - 1907698..1907880 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HXS78_RS09115 (HXS78_09120) - 1907952..1908080 (+) 129 Protein_1796 transposase domain-containing protein -
  HXS78_RS09120 (HXS78_09125) - 1908369..1908449 (-) 81 Protein_1797 hypothetical protein -
  HXS78_RS09125 (HXS78_09130) yeeW 1908495..1908689 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=404749 HXS78_RS09085 WP_000980581.1 1902446..1903873(-) (sbcB) [Escherichia coli strain AMSCJX04]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=404749 HXS78_RS09085 WP_000980581.1 1902446..1903873(-) (sbcB) [Escherichia coli strain AMSCJX04]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment