Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GOL70_RS15240 Genome accession   NZ_CP046502
Coordinates   3141422..3142036 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain 111     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3136422..3147036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOL70_RS15225 (GOL70_15255) helD 3136646..3138700 (-) 2055 WP_048219154.1 DNA helicase IV -
  GOL70_RS15230 (GOL70_15260) - 3138826..3139272 (+) 447 WP_003035892.1 YccF domain-containing protein -
  GOL70_RS15235 (GOL70_15265) yccS 3139291..3141444 (+) 2154 WP_032941200.1 YccS family putative transporter -
  GOL70_RS15240 (GOL70_15270) sxy/tfoX 3141422..3142036 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  GOL70_RS15245 (GOL70_15275) sulA 3142254..3142763 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  GOL70_RS15250 (GOL70_15280) ompA 3143121..3144179 (+) 1059 WP_003836839.1 porin OmpA -
  GOL70_RS15255 (GOL70_15285) matP 3144268..3144720 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  GOL70_RS15260 (GOL70_15290) - 3144906..3146666 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=404749 GOL70_RS15240 WP_003035889.1 3141422..3142036(-) (sxy/tfoX) [Citrobacter freundii strain 111]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=404749 GOL70_RS15240 WP_003035889.1 3141422..3142036(-) (sxy/tfoX) [Citrobacter freundii strain 111]
ATGAAAGAGCTTTCTTATGCACGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACTGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment