Detailed information NTG0404736

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HXS78_RS05330
• Genome accession: NZ_CP058308
• Coordinates: 1104523..1105515 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AMSCJX04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1099523..1110515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HXS78_RS05300 (HXS78_05305)	ispD	1099584..1100294 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HXS78_RS05305 (HXS78_05310)	ispF	1100294..1100773 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HXS78_RS05310 (HXS78_05315)	truD	1100770..1101819 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HXS78_RS05315 (HXS78_05320)	surE	1101800..1102561 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HXS78_RS05320 (HXS78_05325)	pcm	1102555..1103181 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HXS78_RS05325 (HXS78_05330)	nlpD	1103366..1104460 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HXS78_RS05330 (HXS78_05335)	rpoS	1104523..1105515 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HXS78_RS05335 (HXS78_05340)	-	1105636..1106043 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
HXS78_RS05340 (HXS78_05345)	-	1106190..1106783 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HXS78_RS05345 (HXS78_05350)	-	1106783..1108210 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HXS78_RS05350 (HXS78_05355)	-	1108221..1108457 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HXS78_RS05355 (HXS78_05360)	ygbN	1108496..1109860 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=404736 HXS78_RS05330 WP_000081550.1 1104523..1105515(+) (rpoS) [Escherichia coli strain AMSCJX04]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=404736 HXS78_RS05330 WP_000081550.1 1104523..1105515(+) (rpoS) [Escherichia coli strain AMSCJX04]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715