Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VY92_RS08240 Genome accession   NZ_CP058307
Coordinates   1709105..1709611 (-) Length   168 a.a.
NCBI ID   WP_035685396.1    Uniprot ID   A0A0F5EQV1
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1704105..1714611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS08215 (VY92_008220) - 1705046..1705186 (-) 141 WP_156127777.1 hypothetical protein -
  VY92_RS08220 (VY92_008225) - 1705217..1706530 (+) 1314 WP_017805051.1 NCS2 family permease -
  VY92_RS08225 (VY92_008230) comE1/comEA 1706793..1707149 (+) 357 WP_035685388.1 helix-hairpin-helix domain-containing protein Machinery gene
  VY92_RS08230 (VY92_008235) rdgB 1707287..1707883 (+) 597 WP_035685390.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  VY92_RS08235 (VY92_008240) hemW 1707883..1709037 (+) 1155 WP_035685394.1 radical SAM family heme chaperone HemW -
  VY92_RS08240 (VY92_008245) luxS 1709105..1709611 (-) 507 WP_035685396.1 S-ribosylhomocysteine lyase Regulator
  VY92_RS08245 (VY92_008250) - 1709834..1710292 (-) 459 WP_035685398.1 YqaA family protein -
  VY92_RS08250 (VY92_008255) - 1710285..1710893 (-) 609 WP_035685399.1 sugar O-acetyltransferase -
  VY92_RS08255 (VY92_008260) - 1710894..1711496 (-) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  VY92_RS08260 (VY92_008265) - 1711639..1712016 (+) 378 WP_017805060.1 hypothetical protein -
  VY92_RS08265 (VY92_008270) ispF 1712149..1712625 (+) 477 WP_035685404.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  VY92_RS08270 (VY92_008275) truD 1712629..1713636 (+) 1008 WP_035685407.1 tRNA pseudouridine(13) synthase TruD -
  VY92_RS08275 (VY92_008280) surE 1713645..1714385 (+) 741 WP_035685409.1 5'/3'-nucleotidase SurE -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19094.95 Da        Isoelectric Point: 5.5568

>NTDB_id=404696 VY92_RS08240 WP_035685396.1 1709105..1709611(-) (luxS) [Avibacterium paragallinarum strain AVPG2015]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGVGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=404696 VY92_RS08240 WP_035685396.1 1709105..1709611(-) (luxS) [Avibacterium paragallinarum strain AVPG2015]
ATGCCGTTACTTGATAGTTTTAAAGTCGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGCGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGGTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACAGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTGTTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EQV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.494

98.81

0.726