Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   VY92_RS04920 Genome accession   NZ_CP058307
Coordinates   1016416..1017021 (+) Length   201 a.a.
NCBI ID   WP_035685034.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1011416..1022021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS04895 (VY92_004900) - 1012607..1013113 (+) 507 WP_124994819.1 YadA C-terminal domain-containing protein -
  VY92_RS04905 (VY92_004910) secG 1013493..1013831 (-) 339 WP_035685027.1 preprotein translocase subunit SecG -
  VY92_RS04910 (VY92_004915) - 1013944..1015884 (-) 1941 WP_035685029.1 DNA topoisomerase III -
  VY92_RS04915 (VY92_004920) - 1015999..1016328 (+) 330 WP_035685032.1 YbaB/EbfC family nucleoid-associated protein -
  VY92_RS04920 (VY92_004925) recR 1016416..1017021 (+) 606 WP_035685034.1 recombination mediator RecR Machinery gene
  VY92_RS04925 (VY92_004930) metC 1017106..1018299 (-) 1194 WP_035685037.1 cystathionine beta-lyase -
  VY92_RS04930 (VY92_004935) - 1018458..1019060 (+) 603 WP_035685040.1 peroxiredoxin C -
  VY92_RS04935 (VY92_004940) - 1019225..1019509 (+) 285 WP_017806228.1 YcgL domain-containing protein -
  VY92_RS04940 (VY92_004945) hldE 1019935..1021362 (-) 1428 WP_035685042.1 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22147.28 Da        Isoelectric Point: 5.0764

>NTDB_id=404685 VY92_RS04920 WP_035685034.1 1016416..1017021(+) (recR) [Avibacterium paragallinarum strain AVPG2015]
MQTSPLLETLIDTLRCLPGVGPKSAQRMAYHLLQRDRSGGMDLARALTAAMSQIGHCEQCRTFTEEEVCTICENPRRQNS
GLLCVVEQPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLNRRLENEAFTEVILATNPTIEGEATANYIAEL
CMQRGIKVTRIAHGIPVGGELEMVDSNTLGHSFSGRREIQY

Nucleotide


Download         Length: 606 bp        

>NTDB_id=404685 VY92_RS04920 WP_035685034.1 1016416..1017021(+) (recR) [Avibacterium paragallinarum strain AVPG2015]
ATGCAAACCAGTCCATTATTAGAAACGCTGATTGACACATTACGCTGTTTACCTGGTGTGGGACCGAAATCCGCCCAGCG
AATGGCTTATCATTTATTGCAACGCGATCGTAGCGGTGGAATGGATCTCGCCCGTGCCTTAACCGCCGCGATGTCGCAAA
TTGGGCATTGCGAACAATGTCGTACCTTCACCGAAGAAGAGGTCTGCACCATTTGTGAAAATCCACGCCGCCAAAATTCG
GGCTTGCTCTGTGTGGTGGAACAACCCTCCGATATTCAAGCCATTGAACAAACAGGGCAATTTTCAGGGCGTTATTTTGT
GCTGATGGGGCATTTATCCCCGTTAGATGGAATTGGTCCAAAAGAGATTGGACTGGATTTACTCAATCGCCGCTTAGAAA
ATGAAGCTTTTACCGAAGTTATTTTAGCCACCAACCCGACCATCGAGGGCGAAGCCACTGCCAATTATATTGCCGAGCTT
TGTATGCAACGAGGAATCAAAGTAACGCGTATCGCCCACGGTATTCCCGTCGGTGGCGAGCTGGAAATGGTTGATAGCAA
TACCCTAGGGCATTCTTTTTCGGGACGGAGAGAGATTCAATATTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

46.734

99.005

0.463
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.005

0.428