Detailed information NTG0404679

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: VY92_RS03780
• Genome accession: NZ_CP058307
• Coordinates: 782693..784114 (+)
• Length: 473 a.a.
• NCBI ID: WP_035684621.1
• Uniprot ID: -
• Organism: Avibacterium paragallinarum strain AVPG2015
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 777693..789114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VY92_RS03775 (VY92_003780)	-	781813..782688 (+)	876	WP_035684619.1	DMT family transporter	-
VY92_RS03780 (VY92_003785)	sbcB	782693..784114 (+)	1422	WP_035684621.1	exodeoxyribonuclease I	Machinery gene
VY92_RS03790 (VY92_003795)	-	785092..785574 (-)	483	WP_081637494.1	DUF2726 domain-containing protein	-
VY92_RS03795 (VY92_003800)	-	786235..786888 (-)	654	WP_035684625.1	IS1595 family transposase	-
VY92_RS03800 (VY92_003805)	-	787038..787508 (-)	471	WP_035684628.1	ClpXP protease specificity-enhancing factor	-
VY92_RS03805 (VY92_003810)	sspA	787512..788150 (-)	639	WP_035684630.1	stringent starvation protein SspA	-
VY92_RS03810 (VY92_003815)	rpsI	788435..788827 (-)	393	WP_017806615.1	30S ribosomal protein S9	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 55031.55 Da
• Isoelectric Point: 5.9984

>NTDB_id=404679 VY92_RS03780 WP_035684621.1 782693..784114(+) (sbcB) [Avibacterium paragallinarum strain AVPG2015]
MKDDFSFFIYDYESFGINPATDRPAQFAGIRTDKDFNIIGEPVMFYCKQTNDYLPSPSAVMVTGITPQECNEKGLSEPEF
AQRILQEFSVPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWVYDDARMPSF
RLENLTKANGIEHSNAHDAMADVYATIEMAKLIKQKQPRLFQFFFEHRDKKSLEAMIDTATMTPLVHVSGMLGNYRGNTT
WIAPLAWHPTNKNAVIVCDLDSNIEDLLSKSAVELQQHLYTKKSELEQQGILPVPLKLVHINKCPILAPAKTLLPENAQR
LGIDRQRCLDNLAKLRANTEIRDKVLQIFTDERVFESSDNVETELYSGFFGINDKNNMAILRDLPPEKLSEHNLTFQDKR
VEALLFHYRARHFYKTLSRAEQVRWDKYRRNKLEKSAVQFEQELQNLVEENQNHPEKLALLQQIYEYGVKLLG

Nucleotide

• Length: 1422 bp

>NTDB_id=404679 VY92_RS03780 WP_035684621.1 782693..784114(+) (sbcB) [Avibacterium paragallinarum strain AVPG2015]
ATGAAAGATGATTTCAGCTTTTTTATTTATGATTACGAAAGTTTCGGCATCAATCCCGCGACGGATCGCCCCGCACAGTT
TGCGGGCATTCGTACCGATAAAGATTTCAACATTATTGGCGAGCCTGTGATGTTTTATTGCAAGCAAACCAATGATTATT
TGCCCTCGCCCAGTGCGGTGATGGTAACGGGAATTACGCCGCAAGAATGCAATGAAAAAGGCTTATCCGAACCCGAATTT
GCTCAACGCATTTTGCAAGAATTTTCCGTGCCGAACACCTGCGTAATGGGGTTTAATAATATTCGTTACGATGACGAAAT
GACCCGCTATACTTTTTACCGCAACTTTATTGATCCCTATGAATATAGCTGGAAAAACGGCAATTCTCGCTGGGATCTAT
TGGATTTGGTGCGGGCTTGTTATGCTTTGCGTCCTGAGGGAATAAATTGGGTTTATGATGACGCAAGAATGCCTTCATTC
CGCTTGGAAAATCTCACCAAAGCCAATGGAATAGAGCATAGCAATGCACACGATGCAATGGCTGATGTGTATGCCACCAT
TGAAATGGCGAAGCTGATTAAGCAAAAACAACCGAGATTGTTCCAGTTTTTCTTTGAGCATCGCGATAAAAAATCCCTTG
AAGCAATGATTGATACGGCGACGATGACCCCCTTAGTTCACGTTTCAGGAATGTTGGGAAATTATCGCGGCAATACCACT
TGGATCGCCCCGCTTGCGTGGCACCCAACCAATAAAAATGCGGTGATTGTGTGTGATTTGGATAGCAATATCGAGGATTT
ACTGAGTAAAAGTGCGGTCGAATTACAGCAACATTTATACACGAAAAAATCCGAACTCGAACAGCAAGGGATTTTACCTG
TTCCGTTAAAATTGGTGCATATTAATAAATGCCCAATTCTTGCCCCCGCGAAAACCTTATTACCTGAAAATGCTCAGCGT
TTAGGCATTGATCGCCAGCGTTGTTTGGATAATCTCGCGAAATTGCGTGCAAATACGGAAATTCGCGATAAAGTGCTACA
AATTTTTACTGACGAGCGGGTATTTGAGTCAAGTGATAATGTGGAAACGGAATTATACAGTGGCTTTTTTGGCATTAATG
ATAAAAACAATATGGCGATTTTGCGTGATTTACCGCCTGAAAAACTCTCAGAACACAATCTAACATTCCAAGATAAGCGG
GTAGAGGCGTTGTTATTCCATTACCGTGCGCGACATTTTTATAAAACTTTGAGCAGAGCAGAGCAGGTGCGATGGGATAA
ATACCGCCGTAACAAGTTAGAAAAAAGTGCGGTGCAATTTGAGCAAGAATTACAAAACCTTGTGGAAGAAAACCAAAATC
ACCCTGAAAAATTGGCATTGTTGCAGCAAATTTATGAATATGGAGTGAAGTTATTAGGCTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-468)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	56.009	98.52	0.552