Detailed information NTG0404599

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUU85_RS05820
• Genome accession: NZ_CP058302
• Coordinates: 1213807..1214799 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AH65
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1208807..1219799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUU85_RS05800 (HUU85_05810)	otnK	1209582..1210844 (+)	1263	WP_176256467.1	3-oxo-tetronate kinase	-
HUU85_RS05805 (HUU85_05815)	ygbL	1210841..1211479 (+)	639	WP_001278994.1	aldolase	-
HUU85_RS05810 (HUU85_05820)	ygbM	1211484..1212260 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
HUU85_RS05815 (HUU85_05825)	ygbN	1212349..1213713 (+)	1365	WP_000104429.1	GntP family transporter	-
HUU85_RS05820 (HUU85_05830)	rpoS	1213807..1214799 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HUU85_RS05825 (HUU85_05835)	nlpD	1214862..1215956 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HUU85_RS05830 (HUU85_05840)	pcm	1216141..1216767 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HUU85_RS05835 (HUU85_05845)	surE	1216761..1217522 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HUU85_RS05840 (HUU85_05850)	truD	1217503..1218552 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HUU85_RS05845 (HUU85_05855)	ispF	1218549..1219028 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUU85_RS05850 (HUU85_05860)	ispD	1219028..1219738 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=404599 HUU85_RS05820 WP_000081550.1 1213807..1214799(-) (rpoS) [Escherichia coli strain AH65]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=404599 HUU85_RS05820 WP_000081550.1 1213807..1214799(-) (rpoS) [Escherichia coli strain AH65]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715