Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GNG71_RS01315 Genome accession   NZ_CP046478
Coordinates   262071..263444 (+) Length   457 a.a.
NCBI ID   WP_003728085.1    Uniprot ID   -
Organism   Listeria monocytogenes strain LM928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 257071..268444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG71_RS01295 (GNG71_01305) - 257425..257883 (+) 459 WP_003726421.1 CtsR family transcriptional regulator -
  GNG71_RS01300 (GNG71_01310) - 257896..258414 (+) 519 WP_003728087.1 UvrB/UvrC motif-containing protein -
  GNG71_RS01305 (GNG71_01315) - 258411..259433 (+) 1023 WP_003728086.1 protein arginine kinase -
  GNG71_RS01310 (GNG71_01320) - 259462..261924 (+) 2463 WP_003726424.1 ATP-dependent Clp protease ATP-binding subunit -
  GNG71_RS01315 (GNG71_01325) radA 262071..263444 (+) 1374 WP_003728085.1 DNA repair protein RadA Machinery gene
  GNG71_RS01320 (GNG71_01330) - 263577..264650 (+) 1074 WP_003726425.1 PIN/TRAM domain-containing protein -
  GNG71_RS01325 (GNG71_01335) ispD 264670..265368 (+) 699 WP_003728084.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GNG71_RS01330 (GNG71_01340) ispF 265361..265834 (+) 474 WP_003728083.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GNG71_RS01335 (GNG71_01345) gltX 265853..267328 (+) 1476 WP_003728082.1 glutamate--tRNA ligase -
  GNG71_RS01340 (GNG71_01350) epsC 267728..268342 (+) 615 WP_003726845.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50049.71 Da        Isoelectric Point: 7.9613

>NTDB_id=404574 GNG71_RS01315 WP_003728085.1 262071..263444(+) (radA) [Listeria monocytogenes strain LM928]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NVKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEATKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=404574 GNG71_RS01315 WP_003728085.1 262071..263444(+) (radA) [Listeria monocytogenes strain LM928]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCAAAATGGATGGGAAAATGTCC
GAATTGCAACGAGTGGAATCAGATGGTAGAAGCTTTGGAGCCGTCAAAAAAATCACGCTCAGCTTTTAATCATACGGGAG
AACCTTCGAAAGCGACTCCAATTACTCAAATAGCAAGTGAAACAGAAAAACGTGTCGAAACCAATATGCCGGAGTTAAAT
AGAGTTCTTGGCGGAGGTGTGGTTCCAGGATCTATGGTACTTGTCGGTGGGGATCCTGGTATCGGGAAGTCGACTTTATT
ACTGCAAGTTTCAGCTCAACTGACGCTCACAAATAAAAAAGTATTGTATATATCAGGAGAAGAATCTATCAAACAAACGA
AGCTGCGGGCGGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCTGATTTTGTAGTCATTGACTCCATTCAGACTGTTTATCATCCTGATGTTACAAGTGCAGC
GGGGAGTGTTTCGCAAGTTAGGGAATGTACAGCGACATTGATGCGAATTGCTAAAATGCAAAACATTGCAATCTTTATTG
TTGGACATGTAACAAAGGAAGGTGCTATTGCGGGGCCGCGCCTACTTGAACATATGGTTGATACTGTGCTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAATGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTTGTAGAAGTTGCTAATCCTTCCGAAGTGTTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGTT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGCCCCGTCCTTGTGGAAATACAAGCGCTTGTTTCGCCTACGATGTTTGGT
AATGTTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCTCTAATTATGGCTGTTTTAGAAAAGCGAGTAGGTTT
AATGTTGCAAAACCAAGATGCTTATTTGAAAGCAGCTGGTGGGGTTAAATTGGATGAACCTGCAGTGGATTTGGCGGTTG
CAGTCAGTGTTGCATCTAGCTATCGTGATAAACCAACAAGAAGTACGGATTGCTTTATTGGAGAACTTGGACTTACAGGT
GAGATTCGTCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCCACAAAACTTGGCTTTAAGCGAATTTTTATTCCTAA
AAATAACGAAGGAAATTGGAAAATACCGAAAGACGTGCAAGTGGTTGGGGTGGAAACGATTGGAGAAGCTTTGAAGAAAG
CTTTACCAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.202

99.781

0.681
  radA Streptococcus pneumoniae Rx1

64.823

98.906

0.641
  radA Streptococcus pneumoniae D39

64.823

98.906

0.641
  radA Streptococcus pneumoniae R6

64.823

98.906

0.641
  radA Streptococcus pneumoniae TIGR4

64.823

98.906

0.641
  radA Streptococcus mitis NCTC 12261

64.823

98.906

0.641
  radA Streptococcus mitis SK321

64.602

98.906

0.639

Multiple sequence alignment