Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   GOL67_RS07325 Genome accession   NZ_CP046476
Coordinates   1536559..1537629 (-) Length   356 a.a.
NCBI ID   WP_206209066.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MEI001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1531559..1542629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOL67_RS07285 (GOL67_07330) gcvPA 1531736..1533082 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  GOL67_RS07290 (GOL67_07335) gcvT 1533102..1534193 (-) 1092 WP_206209064.1 glycine cleavage system aminomethyltransferase GcvT -
  GOL67_RS07295 (GOL67_07340) - 1534352..1534876 (-) 525 WP_001015121.1 shikimate kinase -
  GOL67_RS07300 (GOL67_07345) - 1534866..1535012 (-) 147 WP_001789879.1 hypothetical protein -
  GOL67_RS07305 (GOL67_07350) comGF 1535109..1535606 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  GOL67_RS07310 (GOL67_07355) comGE 1535524..1535823 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  GOL67_RS07315 (GOL67_07360) comGD 1535810..1536256 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  GOL67_RS07320 (GOL67_07365) comGC 1536234..1536545 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  GOL67_RS07325 (GOL67_07370) comGB 1536559..1537629 (-) 1071 WP_206209066.1 competence type IV pilus assembly protein ComGB Machinery gene
  GOL67_RS07330 (GOL67_07375) comGA 1537601..1538575 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  GOL67_RS07335 (GOL67_07380) - 1538627..1539250 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  GOL67_RS07340 (GOL67_07385) - 1539247..1539576 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  GOL67_RS07345 (GOL67_07390) - 1539576..1540562 (-) 987 WP_000161314.1 ROK family glucokinase -
  GOL67_RS07350 (GOL67_07395) - 1540559..1540762 (-) 204 WP_000087561.1 YqgQ family protein -
  GOL67_RS07355 (GOL67_07400) - 1540743..1542206 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41401.76 Da        Isoelectric Point: 10.0606

>NTDB_id=404546 GOL67_RS07325 WP_206209066.1 1536559..1537629(-) (comGB) [Staphylococcus aureus strain MEI001]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVAMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQLMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=404546 GOL67_RS07325 WP_206209066.1 1536559..1537629(-) (comGB) [Staphylococcus aureus strain MEI001]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGCAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAATTGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment