Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SYNTR_RS10690 Genome accession   NZ_CP046457
Coordinates   2215391..2216746 (+) Length   451 a.a.
NCBI ID   WP_156204498.1    Uniprot ID   A0A6I6DLS4
Organism   Candidatus Syntrophocurvum alkaliphilum isolate B(2M)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2210391..2221746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNTR_RS10670 (SYNTR_2149) - 2210560..2211003 (+) 444 WP_156204494.1 CtsR family transcriptional regulator -
  SYNTR_RS10675 (SYNTR_2150) - 2211053..2211568 (+) 516 WP_156204495.1 UvrB/UvrC motif-containing protein -
  SYNTR_RS10680 (SYNTR_2151) - 2211580..2212653 (+) 1074 WP_156204496.1 protein arginine kinase -
  SYNTR_RS10685 (SYNTR_2152) - 2212674..2215160 (+) 2487 WP_197079117.1 ATP-dependent Clp protease ATP-binding subunit -
  SYNTR_RS10690 (SYNTR_2153) radA 2215391..2216746 (+) 1356 WP_156204498.1 DNA repair protein RadA Machinery gene
  SYNTR_RS10695 (SYNTR_2154) disA 2216746..2217816 (+) 1071 WP_156204499.1 DNA integrity scanning diadenylate cyclase DisA -
  SYNTR_RS10700 (SYNTR_2155) - 2217858..2218256 (-) 399 WP_156204500.1 DUF1573 domain-containing protein -
  SYNTR_RS10705 (SYNTR_2156) - 2218481..2219590 (+) 1110 WP_197079118.1 PIN/TRAM domain-containing protein -
  SYNTR_RS10710 (SYNTR_2157) ispD 2219583..2220293 (+) 711 WP_156204502.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  SYNTR_RS10715 (SYNTR_2158) ispF 2220616..2221089 (+) 474 WP_156204503.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49389.02 Da        Isoelectric Point: 5.3913

>NTDB_id=404525 SYNTR_RS10690 WP_156204498.1 2215391..2216746(+) (radA) [Candidatus Syntrophocurvum alkaliphilum isolate B(2M)]
MGKTSNKYVCSECGYVNIKWLGKCPSCNNWNTLLEENVSKKSTNITKKVDAIPLTNITNEDVLRVASGIGELDRVLGGGI
VPGSLVLIGGDPGIGKSTILLQVADSIGKQNKKVLYLSGEEALKQIRLRSLRLNINNKNIYLLNEQNIELLELYLEDINP
DLIIIDSIQTVYSENISSIPGSVSQLRECTAKIMEIAKSQEKAFFVVGHITKDGVIAGPKVLEHMVDVVIYFEGEKNFAF
RLLRGVKNRFGSTDEIGLMEMRSQGLVEVENPSYFFLSDSDSNASGTSVVASFEGSRPLLIEAQALVTPTGQGYPRRMTS
GIDQNRLALIIAVLEKRAGINLAMYDVYIKITGGVFLKDPSIDLGLAAAIISSYRDEPLSPGTVFIGELGLSGDIRSVPS
VELRLKEIQKLGFNTVVMPISSSLNKEIEKKLNIIQINNIDDLIHKILEGQ

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=404525 SYNTR_RS10690 WP_156204498.1 2215391..2216746(+) (radA) [Candidatus Syntrophocurvum alkaliphilum isolate B(2M)]
ATGGGGAAAACTAGTAATAAATATGTATGCAGTGAATGTGGATATGTAAATATAAAATGGCTAGGTAAATGTCCTAGCTG
TAATAACTGGAATACTCTGCTTGAAGAAAATGTGTCTAAAAAAAGTACAAATATAACAAAAAAAGTTGATGCAATCCCCT
TAACTAATATAACCAATGAAGATGTTTTAAGAGTTGCTAGTGGAATTGGAGAACTTGACAGGGTCCTTGGTGGAGGGATT
GTACCAGGTTCTTTAGTTTTAATTGGTGGTGATCCAGGCATAGGGAAATCAACAATATTATTGCAAGTTGCAGATTCCAT
TGGCAAACAAAATAAAAAAGTATTATATTTATCTGGAGAAGAAGCTCTTAAACAAATAAGATTAAGGTCGTTACGGCTTA
ATATTAACAATAAAAACATATATTTATTAAATGAACAAAATATAGAATTACTAGAACTATACTTAGAAGATATAAATCCA
GATCTAATTATTATAGATTCTATACAAACGGTATATTCTGAAAACATTTCCTCTATACCCGGGAGTGTATCGCAGCTTAG
AGAATGTACTGCTAAAATAATGGAGATTGCAAAATCTCAAGAAAAAGCTTTTTTTGTAGTGGGGCATATTACAAAAGATG
GTGTTATTGCAGGACCTAAAGTGTTAGAACATATGGTAGATGTAGTAATTTACTTTGAAGGTGAAAAAAATTTCGCGTTT
CGATTGTTAAGAGGAGTTAAGAATCGCTTTGGTTCAACAGATGAAATAGGATTAATGGAAATGAGAAGCCAAGGTTTAGT
AGAAGTTGAAAATCCATCATATTTTTTTTTAAGTGATTCAGATAGTAATGCTAGTGGTACGTCAGTTGTTGCTAGCTTTG
AAGGTAGCAGACCTCTTTTAATTGAAGCCCAAGCTTTAGTTACTCCTACAGGACAAGGATATCCTAGGCGCATGACTTCT
GGAATTGATCAAAATAGGCTTGCTCTAATAATAGCAGTCTTAGAGAAGAGAGCAGGAATAAATTTGGCAATGTATGATGT
ATATATAAAAATTACGGGTGGAGTATTTTTAAAAGATCCATCTATTGATCTTGGGCTAGCGGCTGCTATTATATCTAGTT
ATAGAGATGAACCATTATCACCAGGGACTGTTTTTATAGGAGAACTAGGGTTGTCAGGAGATATTCGATCTGTTCCTTCT
GTTGAATTAAGATTAAAGGAAATACAAAAGCTAGGGTTTAATACTGTTGTAATGCCAATTTCATCTTCTTTAAATAAAGA
GATTGAGAAAAAGCTTAATATAATACAAATAAATAATATAGATGATTTAATACATAAAATTCTGGAGGGACAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(61-214)

Subunit ChlI of Mg-chelatase (ChlI)

(360-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6DLS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.345

100

0.501
  radA Streptococcus pneumoniae Rx1

49.448

100

0.497
  radA Streptococcus pneumoniae D39

49.448

100

0.497
  radA Streptococcus pneumoniae R6

49.448

100

0.497
  radA Streptococcus pneumoniae TIGR4

49.448

100

0.497
  radA Streptococcus mitis NCTC 12261

49.448

100

0.497
  radA Streptococcus mitis SK321

49.227

100

0.494

Multiple sequence alignment