Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HX740_RS03085 Genome accession   NZ_CP058293
Coordinates   597180..597563 (+) Length   127 a.a.
NCBI ID   WP_002869355.1    Uniprot ID   A1VYZ5
Organism   Campylobacter jejuni strain D33a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592180..602563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX740_RS03065 (HX740_03060) - 592259..594193 (-) 1935 WP_002869357.1 ribonuclease R family protein -
  HX740_RS03070 (HX740_03065) ilvC 594312..595334 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  HX740_RS03075 (HX740_03070) - 595338..596420 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  HX740_RS03080 (HX740_03075) dprA 596410..597183 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  HX740_RS03085 (HX740_03080) dprB 597180..597563 (+) 384 WP_002869355.1 Holliday junction resolvase RuvX Machinery gene
  HX740_RS03090 (HX740_03085) - 597592..598431 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HX740_RS03095 (HX740_03090) msrA 598607..599104 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  HX740_RS03100 (HX740_03095) ppa 599145..599663 (-) 519 WP_002855031.1 inorganic diphosphatase -
  HX740_RS03105 (HX740_03100) adk 599673..600251 (-) 579 WP_002855137.1 adenylate kinase -
  HX740_RS03110 (HX740_03105) aspS 600248..601999 (-) 1752 WP_002869354.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14143.68 Da        Isoelectric Point: 9.8358

>NTDB_id=404498 HX740_RS03085 WP_002869355.1 597180..597563(+) (dprB) [Campylobacter jejuni strain D33a]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSREEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=404498 HX740_RS03085 WP_002869355.1 597180..597563(+) (dprB) [Campylobacter jejuni strain D33a]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGAGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1VYZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441