Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HX740_RS00955 Genome accession   NZ_CP058293
Coordinates   191190..192695 (-) Length   501 a.a.
NCBI ID   WP_002854276.1    Uniprot ID   -
Organism   Campylobacter jejuni strain D33a     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 186190..197695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX740_RS00925 (HX740_00920) - 186392..187576 (-) 1185 WP_002854511.1 metallophosphoesterase -
  HX740_RS00930 (HX740_00925) - 187586..187795 (-) 210 WP_002857271.1 alkylphosphonate utilization protein -
  HX740_RS00935 (HX740_00930) - 187788..188507 (-) 720 WP_002851673.1 TerC family protein -
  HX740_RS00940 (HX740_00935) purN 188579..189145 (-) 567 WP_002869059.1 phosphoribosylglycinamide formyltransferase -
  HX740_RS00945 (HX740_00940) - 189136..190506 (-) 1371 WP_002869060.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HX740_RS00950 (HX740_00945) - 190490..191188 (-) 699 WP_002826913.1 NYN domain-containing protein -
  HX740_RS00955 (HX740_00950) comM 191190..192695 (-) 1506 WP_002854276.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HX740_RS00960 (HX740_00955) def 192692..193219 (-) 528 WP_002869061.1 peptide deformylase -
  HX740_RS00965 (HX740_00960) clpP 193255..193839 (-) 585 WP_002869062.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HX740_RS00970 (HX740_00965) tig 193839..195173 (-) 1335 WP_002869063.1 trigger factor -
  HX740_RS00975 (HX740_00970) folE 195317..195889 (+) 573 WP_002854344.1 GTP cyclohydrolase I FolE -
  HX740_RS00980 (HX740_00975) fliI 195889..197274 (+) 1386 WP_002854283.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56363.41 Da        Isoelectric Point: 8.7417

>NTDB_id=404490 HX740_RS00955 WP_002854276.1 191190..192695(-) (comM) [Campylobacter jejuni strain D33a]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=404490 HX740_RS00955 WP_002854276.1 191190..192695(-) (comM) [Campylobacter jejuni strain D33a]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGACTTGCAAGTGTAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATTACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTTTCTGCTAAAATTAAAAAAGCTAAAATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTCGCAAGCCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGACAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAGCCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTACTAGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473