Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GL301_RS11250 Genome accession   NZ_CP046449
Coordinates   2287453..2289258 (-) Length   601 a.a.
NCBI ID   WP_070232306.1    Uniprot ID   -
Organism   Listeria sp. LM90SB2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2282453..2294258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL301_RS11230 isdE 2283376..2284248 (-) 873 WP_003727849.1 heme ABC transporter substrate-binding protein IsdE -
  GL301_RS11235 hbp2 2284335..2286044 (-) 1710 WP_003730872.1 hemin/hemoglobin-binding protein Hbp2 -
  GL301_RS11240 isdC 2286057..2286683 (-) 627 WP_070008120.1 heme uptake protein IsdC -
  GL301_RS11245 - 2286894..2287154 (-) 261 WP_010959019.1 DUF3116 family protein -
  GL301_RS11250 pepF 2287453..2289258 (-) 1806 WP_070232306.1 oligoendopeptidase F Regulator
  GL301_RS11255 - 2289333..2290448 (-) 1116 WP_003740782.1 competence protein CoiA -
  GL301_RS11260 mecA 2290574..2291227 (-) 654 WP_003724608.1 adaptor protein MecA -
  GL301_RS11265 spxA 2291459..2291854 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  GL301_RS11270 - 2292174..2293142 (-) 969 WP_117383339.1 ATP-binding cassette domain-containing protein -
  GL301_RS11275 - 2293139..2294215 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68550.68 Da        Isoelectric Point: 4.5758

>NTDB_id=404465 GL301_RS11250 WP_070232306.1 2287453..2289258(-) (pepF) [Listeria sp. LM90SB2]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEESEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTSPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHKADQEGV
ALTADYLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=404465 GL301_RS11250 WP_070232306.1 2287453..2289258(-) (pepF) [Listeria sp. LM90SB2]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCGGAAAATCTAACTTGGGATTTAACTACGATTTATCCAAA
CGATGAAGCTTGGGAACAAGCATTTACAGATTTGCAAAAAATCACAGAAGAAAGCGAGCAATTTAAAGGGCGTTTATCGG
AAAGCAGCCAGACACTATATGAAGCACTTCAATTTCGAGATAATGCATATGATTTAATTAGTAACTTATATGTATATGCG
CATTTGAAAATGGACCAAGATACGGCTAATGCGAAATATCAAGGTTTACATAGTCGCGCAGGAAGCCTAGTTACAAAGCT
AATGTCTGCACTGTCTTATTATGATCCTGAAATTTTAGCTATGGACGAAAGCGTTTTAAAACAATTTTTAAATGAGAACA
AAGATTTACAATTATATGCGCATTTACTAGAAGAGTTAAATTTAAGCCGACCGTATATTTTAAGTGAGAAAGAGGAGGCT
TTACTAGCTAACGCAGGTGAAGTGCTTGGCAGTTCGTCTAATACTTTTAATACCTTGAATAATGCAGATATGAAGTTTCC
AACCATTAAAGATGAGAACGGGGAAGATATCGAAATTACTCATGGTCGTTTCGGGAAATTGTTGGAAAGTAATGATCCGC
GAGTTCGTCGTGAAGCGTTTCTTGGTGTGTATTCTGTTTATGAAGGCCTAAAAAACACCTTAGCCTCTACTTTGAATGGA
CAAGTGAAGAAGTCTAATTTTTATGCTTCCACTCGTGGCTACACGTCAGCTCGTGAAGCGGCTCTTTCTGGGAACCATAT
TCCTGAAACAGTATATGATTCCTTGTTAAAATCAGTAAATGCGAATGCAGATTTGCTTCATCGTTATGTGAAGTTACGTA
AAGAATTACTTGGCTTAGAGGAATTGCATATGTATGATCTTTATACGCCACTTTCTGATGATGTTAATTTGGAGTTTACT
TATGAAGAAGCGAAAGAACTTGTGCTTGAAGCGCTTAAACCGCTTGGTGATGAATATCAAGCAATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTGATGGAAAATAAAGGAAAACGTAGTGGAGCCTATTCTTCTGGTTCGTATAGTACGAGTC
CTTATATTTTACTCAATTGGCAGGATAATATTAACAATGTTTACACACTTGCGCATGAATTAGGGCATAGTGTGCATAGT
TATTATACAAGAAAAAACCAACCATTTGTTTATGGTGATTATTCGATTTTCTTAGCGGAGGTTGCTTCGACAACAAATGA
AAATTTACTAACTGATTATCTTCTTAAGAAATATGATGATCCAAAAGTTCGTGCTTACTTGTTGAATCACTATTTGGATG
GATTCAAGGGTACTGTATTCCGTCAAACCCAATTTGCTGAATTTGAACATGCTATTCATAAAGCGGATCAAGAAGGAGTG
GCGCTGACTGCGGATTACTTGACCGAAACATATTTTGATATTAACAAGAAATATTACGGGGAAGCGATGGTTTATGATGC
TGAAATCGGTTATGAATGGTCTCGTATTCCGCATTTTTATATGAATTATTATGTGTTCCAATATGCGACTGGTTTTTCTG
CAGCATCTGCATTGAGTGCGAAGATTTTAACAGAAGGCCAAGAAGCGGTGACTGCCTATATTGATTTCTTGAAAGCGGGA
AGTTCGGATTATCCTATCGATGTGTTGAAAAAAGCAGGAGTTGATATGGCAACTCCTAATCCGGTGGATGATGCACTAAA
AGTATTTGAACAAAGATTAGATGAACTAGAAAAATTAGTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.014

98.502

0.503

Multiple sequence alignment