Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HTZ92_RS08145 Genome accession   NZ_CP058289
Coordinates   1724181..1724777 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1719181..1729777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ92_RS08125 (HTZ92_1581) - 1719720..1720949 (+) 1230 WP_000775755.1 GGDEF domain-containing protein -
  HTZ92_RS08130 (HTZ92_1582) aroC 1721046..1722137 (-) 1092 WP_000918444.1 chorismate synthase -
  HTZ92_RS08135 (HTZ92_1583) prmB 1722150..1723154 (-) 1005 WP_000441019.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  HTZ92_RS08140 (HTZ92_1584) - 1723168..1723875 (-) 708 Protein_1584 ribonuclease D -
  HTZ92_RS08145 (HTZ92_1585) recR 1724181..1724777 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  HTZ92_RS08150 (HTZ92_1586) - 1724787..1725116 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  HTZ92_RS08155 (HTZ92_1587) - 1725382..1725618 (-) 237 WP_000917295.1 hypothetical protein -
  HTZ92_RS08160 (HTZ92_1588) - 1725796..1726983 (-) 1188 WP_001076388.1 O-succinylhomoserine sulfhydrylase -
  HTZ92_RS08165 (HTZ92_1589) - 1727117..1728202 (+) 1086 WP_000825836.1 alpha/beta fold hydrolase -
  HTZ92_RS08170 (HTZ92_1590) - 1728283..1729050 (-) 768 WP_000934183.1 class I SAM-dependent methyltransferase -
  HTZ92_RS08175 (HTZ92_1591) - 1729223..1729597 (-) 375 WP_000800035.1 TonB C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=404446 HTZ92_RS08145 WP_000490551.1 1724181..1724777(-) (recR) [Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=404446 HTZ92_RS08145 WP_000490551.1 1724181..1724777(-) (recR) [Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 strain ATCC 19606]
GTGTTTAGCGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTCTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424