Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   GFX43_RS20820 Genome accession   NZ_CP046448
Coordinates   3808924..3809064 (-) Length   46 a.a.
NCBI ID   WP_010886404.1    Uniprot ID   A0AAX3RTW8
Organism   Bacillus subtilis strain ZD01     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3803924..3814064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS20815 - 3807806..3808978 (-) 1173 Protein_3831 condensation domain-containing protein -
  GFX43_RS20820 comS 3808924..3809064 (-) 141 WP_010886404.1 competence protein ComS Regulator
  GFX43_RS20825 srfAB 3809108..3812200 (-) 3093 Protein_3833 surfactin non-ribosomal peptide synthetase SrfAB -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5244.05 Da        Isoelectric Point: 9.2422

>NTDB_id=404436 GFX43_RS20820 WP_010886404.1 3808924..3809064(-) (comS) [Bacillus subtilis strain ZD01]
MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWREK

Nucleotide


Download         Length: 141 bp        

>NTDB_id=404436 GFX43_RS20820 WP_010886404.1 3808924..3809064(-) (comS) [Bacillus subtilis strain ZD01]
TTGAACCGATCAGGCAAGCACCTTATCAGCAGCATTATCCTGTATCCCCGGCCCAGCGGAGAATGTATATCCTCAATCAG
CTTGGACAAGCAAACACAAGCTACAACGTCCCCGCTGTACTTCTGCTGGAGGGAGAAGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(1-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment