Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   B565_RS01570 Genome accession   NC_015424
Coordinates   332724..334163 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii B565     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327724..339163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B565_RS01540 (B565_0299) mlaF 328301..329101 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  B565_RS01545 (B565_0300) - 329309..330304 (+) 996 WP_005336342.1 KpsF/GutQ family sugar-phosphate isomerase -
  B565_RS01550 (B565_0301) kdsC 330304..330858 (+) 555 WP_005355156.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  B565_RS01555 (B565_0302) lptC 330855..331415 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  B565_RS01560 (B565_0303) lptA 331402..331929 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  B565_RS01565 (B565_0304) lptB 331933..332658 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  B565_RS01570 (B565_0305) rpoN/rpoN1 332724..334163 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  B565_RS01575 (B565_0306) hpf 334184..334471 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  B565_RS01580 (B565_0307) ptsN 334474..334920 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  B565_RS01585 (B565_0308) rapZ 334966..335832 (+) 867 WP_005336320.1 RNase adapter RapZ -
  B565_RS01590 (B565_0309) npr 335853..336125 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  B565_RS01595 (B565_0310) - 336143..338047 (-) 1905 WP_005355149.1 BglG family transcription antiterminator -
  B565_RS01600 (B565_0311) dagF 338155..338895 (-) 741 WP_005355147.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=40443 B565_RS01570 WP_005336331.1 332724..334163(+) (rpoN/rpoN1) [Aeromonas veronii B565]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=40443 B565_RS01570 WP_005336331.1 332724..334163(+) (rpoN/rpoN1) [Aeromonas veronii B565]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGACTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAAGTTTACTCTGCCGGCACCGCACAGAGCGCGGGCCCCATCCATGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGTGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
TGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATTTGATCCAGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCCATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491

Multiple sequence alignment