Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GFX43_RS16965 Genome accession   NZ_CP046448
Coordinates   3295594..3296385 (-) Length   263 a.a.
NCBI ID   WP_015383146.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3290594..3301385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS16930 (GFX43_016930) ephM 3291430..3292290 (-) 861 WP_015383151.1 epoxide hydrolase EphM -
  GFX43_RS16935 (GFX43_016935) spdL 3292277..3292609 (-) 333 WP_041517766.1 SdpC immunity protein SpdL -
  GFX43_RS16940 (GFX43_016940) yfhK 3292694..3293212 (-) 519 WP_015252515.1 SH3 domain-containing protein -
  GFX43_RS16945 (GFX43_016945) yfhJ 3293357..3293626 (-) 270 WP_003243789.1 YfhJ family protein -
  GFX43_RS16950 (GFX43_016950) sspK 3293751..3293903 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  GFX43_RS16955 (GFX43_016955) yfhI 3293935..3295128 (-) 1194 WP_015482975.1 MFS transporter -
  GFX43_RS16960 (GFX43_016960) yfhH 3295271..3295585 (-) 315 WP_015383147.1 YfhH family protein -
  GFX43_RS16965 (GFX43_016965) recX 3295594..3296385 (-) 792 WP_015383146.1 recombination regulator RecX Regulator
  GFX43_RS16970 (GFX43_016970) yfhF 3296474..3297385 (+) 912 WP_038428645.1 TIGR01777 family oxidoreductase -
  GFX43_RS16975 (GFX43_016975) yfhE 3297440..3297550 (+) 111 WP_003223230.1 YfhE family protein -
  GFX43_RS16980 (GFX43_016980) yfhD 3297617..3297808 (+) 192 WP_003233561.1 YfhD family protein -
  GFX43_RS16985 (GFX43_016985) yfhC 3297847..3298431 (-) 585 WP_015482973.1 nitroreductase -
  GFX43_RS16990 (GFX43_016990) yfhB 3298519..3299400 (-) 882 WP_015383143.1 PhzF family phenazine biosynthesis isomerase -
  GFX43_RS16995 (GFX43_016995) sxzA 3299515..3300546 (-) 1032 WP_003243057.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30898.10 Da        Isoelectric Point: 6.6690

>NTDB_id=404428 GFX43_RS16965 WP_015383146.1 3295594..3296385(-) (recX) [Bacillus subtilis strain ZD01]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EEHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=404428 GFX43_RS16965 WP_015383146.1 3295594..3296385(-) (recX) [Bacillus subtilis strain ZD01]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGAGCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGGGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACGAGGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTACGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGTAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.24

100

0.992

Multiple sequence alignment