Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GFX43_RS15895 Genome accession   NZ_CP046448
Coordinates   3103948..3104526 (-) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3098948..3109526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS15860 (GFX43_015860) lepB 3098952..3099458 (-) 507 WP_003233128.1 signal peptidase I -
  GFX43_RS15865 (GFX43_015865) yhjE 3099460..3100083 (-) 624 WP_010886465.1 VTT domain-containing protein -
  GFX43_RS15870 (GFX43_015870) - 3100235..3100606 (+) 372 WP_015383278.1 hypothetical protein -
  GFX43_RS15875 (GFX43_015875) yhjC 3100805..3101005 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  GFX43_RS15880 (GFX43_015880) yhjB 3101002..3102471 (+) 1470 WP_015383277.1 sodium:solute symporter -
  GFX43_RS15885 (GFX43_015885) yhjA 3102515..3102784 (-) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  GFX43_RS15890 (GFX43_015890) yhxD 3103002..3103901 (+) 900 WP_015483051.1 SDR family oxidoreductase -
  GFX43_RS15895 (GFX43_015895) comK 3103948..3104526 (-) 579 WP_015483050.1 competence transcription factor ComK Regulator
  GFX43_RS15900 (GFX43_015900) yhzC 3104819..3105052 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  GFX43_RS15905 (GFX43_015905) yhxC 3105080..3105937 (-) 858 WP_015483049.1 SDR family oxidoreductase -
  GFX43_RS15910 (GFX43_015910) comW 3106049..3107578 (+) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  GFX43_RS15915 (GFX43_015915) hemAT 3107717..3109015 (+) 1299 WP_015483047.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=404423 GFX43_RS15895 WP_015483050.1 3103948..3104526(-) (comK) [Bacillus subtilis strain ZD01]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=404423 GFX43_RS15895 WP_015483050.1 3103948..3104526(-) (comK) [Bacillus subtilis strain ZD01]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment