Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GFX43_RS13975 Genome accession   NZ_CP046448
Coordinates   2749428..2749892 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain ZD01     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2744428..2754892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS13955 (GFX43_013955) fadH 2745616..2746380 (-) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -
  GFX43_RS13960 (GFX43_013960) ppeE 2746523..2747383 (+) 861 WP_015483175.1 metallophosphoesterase -
  GFX43_RS13965 (GFX43_013965) ltdD 2747440..2747934 (+) 495 WP_080030726.1 L,D-transpeptidase family protein -
  GFX43_RS13970 (GFX43_013970) ykuC 2748010..2749302 (+) 1293 WP_014479656.1 MFS transporter -
  GFX43_RS13975 (GFX43_013975) kre 2749428..2749892 (+) 465 WP_003232406.1 YkyB family protein Regulator
  GFX43_RS13980 (GFX43_013980) cheV 2749936..2750847 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  GFX43_RS13985 (GFX43_013985) - 2751051..2751212 (+) 162 WP_003245246.1 hypothetical protein -
  GFX43_RS13990 (GFX43_013990) dapX 2751414..2752595 (+) 1182 WP_015252196.1 aminotransferase A -
  GFX43_RS13995 (GFX43_013995) kinA 2752605..2754425 (-) 1821 WP_015483173.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=404411 GFX43_RS13975 WP_003232406.1 2749428..2749892(+) (kre) [Bacillus subtilis strain ZD01]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=404411 GFX43_RS13975 WP_003232406.1 2749428..2749892(+) (kre) [Bacillus subtilis strain ZD01]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment