Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GFX43_RS13875 Genome accession   NZ_CP046448
Coordinates   2733432..2734007 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2728432..2739007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS13850 (GFX43_013850) mobB 2728828..2729349 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  GFX43_RS13855 (GFX43_013855) glp 2729310..2730602 (-) 1293 WP_015383547.1 gephyrin-like molybdotransferase Glp -
  GFX43_RS13860 (GFX43_013860) moeB 2730620..2731639 (-) 1020 WP_015383546.1 molybdopterin-synthase adenylyltransferase MoeB -
  GFX43_RS13865 (GFX43_013865) mobA 2731690..2732289 (-) 600 WP_015383545.1 molybdenum cofactor guanylyltransferase -
  GFX43_RS13870 (GFX43_013870) cse15 2732426..2733391 (+) 966 WP_015383544.1 spore protein Cse15 -
  GFX43_RS13875 (GFX43_013875) rok 2733432..2734007 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  GFX43_RS13880 (GFX43_013880) ykuV 2734473..2734919 (-) 447 WP_015483177.1 thiol-disulfide oxidoreductase YkuV -
  GFX43_RS13885 (GFX43_013885) ahpA 2734989..2735531 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  GFX43_RS13890 (GFX43_013890) mscT 2735768..2736571 (+) 804 WP_041517839.1 small-conductance mechanosensitive channel protein MscT -
  GFX43_RS13895 (GFX43_013895) ykuS 2736608..2736853 (-) 246 WP_003232382.1 YkuS family protein -
  GFX43_RS13900 (GFX43_013900) dapI 2736915..2738039 (-) 1125 WP_015383541.1 N-acetyldiaminopimelate deacetylase -
  GFX43_RS13905 (GFX43_013905) dapD 2738109..2738819 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=404410 GFX43_RS13875 WP_003232378.1 2733432..2734007(-) (rok) [Bacillus subtilis strain ZD01]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=404410 GFX43_RS13875 WP_003232378.1 2733432..2734007(-) (rok) [Bacillus subtilis strain ZD01]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment