Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GFX43_RS13755 Genome accession   NZ_CP046448
Coordinates   2709653..2709931 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain ZD01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2704653..2714931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS13735 (GFX43_013735) ade 2704717..2706450 (-) 1734 WP_015383561.1 adenine deaminase -
  GFX43_RS13740 (GFX43_013740) ktrC 2706606..2707271 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  GFX43_RS13745 (GFX43_013745) ykqA 2707334..2708161 (-) 828 WP_015483181.1 gamma-glutamylcyclotransferase -
  GFX43_RS13750 (GFX43_013750) kinC 2708177..2709463 (-) 1287 WP_015383559.1 two-component sensor histidine kinase KinC -
  GFX43_RS13755 (GFX43_013755) abrB 2709653..2709931 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  GFX43_RS13760 (GFX43_013760) mreBH 2710215..2711222 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  GFX43_RS13765 (GFX43_013765) ykpC 2711323..2711457 (+) 135 WP_003238865.1 protein YkpC -
  GFX43_RS13770 (GFX43_013770) ampS 2711567..2712799 (+) 1233 WP_015383558.1 aminopeptidase -
  GFX43_RS13775 (GFX43_013775) panEB 2712833..2713744 (-) 912 Protein_2703 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=404409 GFX43_RS13755 WP_003244728.1 2709653..2709931(-) (abrB) [Bacillus subtilis strain ZD01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=404409 GFX43_RS13755 WP_003244728.1 2709653..2709931(-) (abrB) [Bacillus subtilis strain ZD01]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment