Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GFX43_RS10610 Genome accession   NZ_CP046448
Coordinates   2027683..2028303 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022683..2033303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS10590 (GFX43_010590) dnaD 2022968..2023666 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  GFX43_RS10595 (GFX43_010595) nth 2023685..2024344 (+) 660 WP_015483371.1 endonuclease III -
  GFX43_RS10600 (GFX43_010600) ypoC 2024341..2024835 (+) 495 WP_015383948.1 YpoC family protein -
  GFX43_RS10605 (GFX43_010605) ponA 2024911..2027661 (-) 2751 WP_015383947.1 PBP1A family penicillin-binding protein -
  GFX43_RS10610 (GFX43_010610) recU 2027683..2028303 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GFX43_RS10615 (GFX43_010615) yppC 2028344..2029306 (+) 963 WP_015383945.1 DUF2515 domain-containing protein -
  GFX43_RS10620 (GFX43_010620) sspM 2029331..2029435 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GFX43_RS10625 (GFX43_010625) yppD 2029633..2029878 (+) 246 WP_004398488.1 YppD family protein -
  GFX43_RS10630 (GFX43_010630) yppE 2029924..2030295 (+) 372 WP_015483369.1 YppE family protein -
  GFX43_RS10635 (GFX43_010635) yppF 2030334..2030522 (-) 189 WP_003230690.1 YppF family protein -
  GFX43_RS10640 (GFX43_010640) sppG 2030709..2031086 (+) 378 WP_014477159.1 YppG family protein -
  GFX43_RS10645 (GFX43_010645) ypqA 2031107..2031526 (-) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  GFX43_RS10650 (GFX43_010650) ptsA 2031664..2032170 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=404405 GFX43_RS10610 WP_004399067.1 2027683..2028303(-) (recU) [Bacillus subtilis strain ZD01]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=404405 GFX43_RS10610 WP_004399067.1 2027683..2028303(-) (recU) [Bacillus subtilis strain ZD01]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment